RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CRIP1P50238 77 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 ZNF506Q5JVG8 444 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 CFAP126Q5VTH2 177 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 PTH2Q96A98 100 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 KRTAP17-1Q9BYP8 105 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 SIVA1O15304 175 aa16.4■□□□□ 0.22
SHMT1-206ENST00000579558 SH2D1AO60880 128 aa16.4■□□□□ 0.22
SHMT1-206ENST00000579558 LTAP01374 205 aa16.4■□□□□ 0.22
SHMT1-206ENST00000579558 FAM162BQ5T6X4 162 aa16.4■□□□□ 0.22
SHMT1-206ENST00000579558 EIF5AL1Q6IS14 154 aaKnown RBP16.4■□□□□ 0.22
SHMT1-206ENST00000579558 TXNDC17Q9BRA2 123 aa16.4■□□□□ 0.22
SHMT1-206ENST00000579558 LOC100131303A0A0U1RQF7 123 aa16.39■□□□□ 0.21
SHMT1-206ENST00000579558 SCO2A0A1W2PP80 73 aa16.39■□□□□ 0.21
SHMT1-206ENST00000579558 M0R036 132 aa16.39■□□□□ 0.21
SHMT1-206ENST00000579558 CIDEAO60543 219 aa16.39■□□□□ 0.21
SHMT1-206ENST00000579558 C1QBP02746 253 aa16.39■□□□□ 0.21
SHMT1-206ENST00000579558 RAB5CP51148 216 aa16.38■□□□□ 0.21
SHMT1-206ENST00000579558 TNP2Q05952 138 aa16.38■□□□□ 0.21
SHMT1-206ENST00000579558 IGHV3-73A0A0B4J1V6 119 aa16.37■□□□□ 0.21
SHMT1-206ENST00000579558 KRBOX1C9JBD0 128 aa16.37■□□□□ 0.21
SHMT1-206ENST00000579558 S100A9P06702 114 aaKnown RBP16.37■□□□□ 0.21
SHMT1-206ENST00000579558 ZNF674Q2M3X9 581 aa16.37■□□□□ 0.21
SHMT1-206ENST00000579558 IL36BQ9NZH7 164 aa16.37■□□□□ 0.21
SHMT1-206ENST00000579558 KIAA1109Q2LD37 5005 aa16.36■□□□□ 0.21
SHMT1-206ENST00000579558 hCG_2014768A0A024R1R8 64 aa16.36■□□□□ 0.21
SHMT1-206ENST00000579558 H3BVH4 76 aa16.36■□□□□ 0.21
SHMT1-206ENST00000579558 NHLRC2Q8NBF2 726 aa16.36■□□□□ 0.21
SHMT1-206ENST00000579558 GRIFINA4D1Z8 144 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 SH2D6Q7Z4S9 175 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 AKAP14Q86UN6 197 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 SLC25A29Q8N8R3 303 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 PRADC1Q9BSG0 188 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 MANBALQ9NQG1 85 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 GNG13Q9P2W3 67 aa16.35■□□□□ 0.21
SHMT1-206ENST00000579558 TRAV1-1A0A0B4J248 108 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 SULT1A2P50226 295 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 CCL20P78556 96 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 RHOHQ15669 191 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 PIK3CD-AS1Q5SR53 167 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 DNLZQ5SXM8 178 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 SLC51BQ86UW2 128 aa16.34■□□□□ 0.21
SHMT1-206ENST00000579558 PKD1P98161 4303 aa16.33■□□□□ 0.21
SHMT1-206ENST00000579558 TMSB15BA0A087X1C1 80 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 TRBV6-4A0A1B0GX49 114 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 A8MWV9 139 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 TEX46H3BTG2 121 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 ARMS2P0C7Q2 107 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 LINC01559Q495D7 138 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 PARLQ9H300 379 aa16.33■□□□□ 0.2
SHMT1-206ENST00000579558 PKHD1P08F94 4074 aa16.32■□□□□ 0.2
SHMT1-206ENST00000579558 MGST1P10620 155 aaKnown RBP16.32■□□□□ 0.2
SHMT1-206ENST00000579558 BTF3P20290 206 aaKnown RBP16.32■□□□□ 0.2
SHMT1-206ENST00000579558 BAGE2Q86Y30 109 aa16.32■□□□□ 0.2
SHMT1-206ENST00000579558 SYT8Q8NBV8 401 aa16.32■□□□□ 0.2
SHMT1-206ENST00000579558 LINC00315P59091 139 aa16.31■□□□□ 0.2
SHMT1-206ENST00000579558 WFDC10BQ8IUB3 73 aa16.31■□□□□ 0.2
SHMT1-206ENST00000579558 DMRTA1Q5VZB9 504 aa16.3■□□□□ 0.2
SHMT1-206ENST00000579558 ZFP2Q6ZN57 461 aa16.3■□□□□ 0.2
SHMT1-206ENST00000579558 LY96Q9Y6Y9 160 aa16.3■□□□□ 0.2
SHMT1-206ENST00000579558 ZNF575Q86XF7 245 aa16.29■□□□□ 0.2
SHMT1-206ENST00000579558 MLST8Q9BVC4 326 aa16.29■□□□□ 0.2
SHMT1-206ENST00000579558 JPT2Q9H910 190 aa16.29■□□□□ 0.2
SHMT1-206ENST00000579558 PHLDA3Q9Y5J5 127 aa16.29■□□□□ 0.2
SHMT1-206ENST00000579558 TIRAPP58753 221 aa16.28■□□□□ 0.2
SHMT1-206ENST00000579558 C11orf52Q96A22 123 aa16.28■□□□□ 0.2
SHMT1-206ENST00000579558 TRAV9-2A0A087WT02 112 aa16.27■□□□□ 0.2
SHMT1-206ENST00000579558 RPL35P42766 123 aaKnown RBP16.27■□□□□ 0.2
SHMT1-206ENST00000579558 Q6ZSN1 163 aa16.27■□□□□ 0.2
SHMT1-206ENST00000579558 C9orf62Q8N4C0 152 aa16.27■□□□□ 0.2
SHMT1-206ENST00000579558 SAMD10Q9BYL1 202 aa16.27■□□□□ 0.2
SHMT1-206ENST00000579558 SCRT2Q9NQ03 307 aa16.27■□□□□ 0.2
SHMT1-206ENST00000579558 DNAH11Q96DT5 4516 aa16.26■□□□□ 0.19
SHMT1-206ENST00000579558 PRR27Q6MZM9 219 aa16.26■□□□□ 0.19
SHMT1-206ENST00000579558 DERL1Q9BUN8 251 aa16.26■□□□□ 0.19
SHMT1-206ENST00000579558 DYNC1H1Q14204 4646 aaKnown RBP16.26■□□□□ 0.19
SHMT1-206ENST00000579558 PCLOQ9Y6V0 5065 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 M0R381 172 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 RHODO00212 210 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 IFNA1P01562 189 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 EVI2AP22794 236 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 RPL19P84098 196 aaKnown RBP16.25■□□□□ 0.19
SHMT1-206ENST00000579558 UFSP1Q6NVU6 142 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 ZFP82Q8N141 532 aa16.25■□□□□ 0.19
SHMT1-206ENST00000579558 DNAH10OSP0CZ25 163 aa16.24■□□□□ 0.19
SHMT1-206ENST00000579558 ATP6V0E2Q8NHE4 81 aa16.24■□□□□ 0.19
SHMT1-206ENST00000579558 CXCL1P09341 107 aa16.23■□□□□ 0.19
SHMT1-206ENST00000579558 MED14OSP0DP75 135 aa16.23■□□□□ 0.19
SHMT1-206ENST00000579558 MEF2BQ02080 365 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-206ENST00000579558 FAM74A4Q5TZK3 123 aa16.23■□□□□ 0.19
SHMT1-206ENST00000579558 Q6ZRN7 208 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-206ENST00000579558 SFRP2Q96HF1 295 aa16.23■□□□□ 0.19
SHMT1-206ENST00000579558 A0A087WWL8 130 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 GAGE12JA6NER3 117 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 K7EP13 123 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 GAGE1Q13065 139 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 GAGE4Q13068 117 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 GAGE5Q13069 117 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 GAGE13Q4V321 117 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 CENPWQ5EE01 88 aa16.22■□□□□ 0.19
SHMT1-206ENST00000579558 TNFRSF18Q9Y5U5 241 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms