RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HAMPP81172 84 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 AKAP14Q86UN6 197 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 KCNS1Q96KK3 526 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 TREM1Q9NP99 234 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 BOLA1Q9Y3E2 137 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 TRAV8-1A0A0A6YYK1 113 aa14.09□□□□□ -0.15
VPS53-216ENST00000574029 FBLL1A6NHQ2 334 aaKnown RBP14.09□□□□□ -0.15
VPS53-216ENST00000574029 UMAD1C9J7I0 102 aa14.09□□□□□ -0.15
VPS53-216ENST00000574029 PFDN1O60925 122 aa14.09□□□□□ -0.15
VPS53-216ENST00000574029 PFN1P07737 140 aaKnown RBP14.09□□□□□ -0.15
VPS53-216ENST00000574029 Q8N814 137 aa14.09□□□□□ -0.15
VPS53-216ENST00000574029 STOML3Q8TAV4 291 aa14.09□□□□□ -0.15
VPS53-216ENST00000574029 TRAV8-6A0A0B4J262 113 aa14.08□□□□□ -0.16
VPS53-216ENST00000574029 A0A1W2PRE2 83 aa14.08□□□□□ -0.16
VPS53-216ENST00000574029 SLC25A29Q8N8R3 303 aa14.08□□□□□ -0.16
VPS53-216ENST00000574029 CIDEAO60543 219 aa14.07□□□□□ -0.16
VPS53-216ENST00000574029 TPT1P13693 172 aaKnown RBP14.07□□□□□ -0.16
VPS53-216ENST00000574029 Q6ZSN1 163 aa14.07□□□□□ -0.16
VPS53-216ENST00000574029 SERTM2A0A1B0GWG4 89 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 TRBV6-4A0A1B0GX49 114 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 RS1O15537 224 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 GNG5P63218 68 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 ZNF876PQ49A33 203 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 OR10J3Q5JRS4 329 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 CFAP126Q5VTH2 177 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 DPPA3Q6W0C5 159 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 C5orf17Q8NAS9 161 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 PRADC1Q9BSG0 188 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 Q9HAA7 133 aa14.06□□□□□ -0.16
VPS53-216ENST00000574029 FHITP49789 147 aa14.05□□□□□ -0.16
VPS53-216ENST00000574029 SUMO1P63165 101 aaKnown RBP14.05□□□□□ -0.16
VPS53-216ENST00000574029 RHOHQ15669 191 aa14.05□□□□□ -0.16
VPS53-216ENST00000574029 LELP1Q5T871 98 aa14.05□□□□□ -0.16
VPS53-216ENST00000574029 MBD3L1Q8WWY6 194 aa14.05□□□□□ -0.16
VPS53-216ENST00000574029 MYCBP2O75592 4640 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 A0A1B0GVG6 124 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 MAP1LC3B2A6NCE7 125 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 GGTLC3B5MD39 225 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 FGF8P55075 233 aaPredicted RBP14.04□□□□□ -0.16
VPS53-216ENST00000574029 NKX6-2Q9C056 277 aaPredicted RBP14.04□□□□□ -0.16
VPS53-216ENST00000574029 MAP1LC3BQ9GZQ8 125 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 FAM30AQ9NZY2 134 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 C11orf21Q9P2W6 132 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 EPDR1Q9UM22 224 aa14.04□□□□□ -0.16
VPS53-216ENST00000574029 SRRM2Q9UQ35 2752 aaKnown RBP14.03□□□□□ -0.16
VPS53-216ENST00000574029 IGHV3-30P01768 117 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 IGHV3-33P01772 117 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 TCRAP04437 139 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 IGHV3-30-3P0DP02 117 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 IGHV3-30-5P0DP03 117 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 ZNF80P51504 273 aaPredicted RBP14.03□□□□□ -0.16
VPS53-216ENST00000574029 SGK494Q96LW2 274 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 C9orf85Q96MD7 179 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 NDFIP1Q9BT67 221 aa14.03□□□□□ -0.16
VPS53-216ENST00000574029 FLG2Q5D862 2391 aaPredicted RBP14.02□□□□□ -0.16
VPS53-216ENST00000574029 LAGE3Q14657 143 aa14.02□□□□□ -0.17
VPS53-216ENST00000574029 EIF5AL1Q6IS14 154 aaKnown RBP14.02□□□□□ -0.17
VPS53-216ENST00000574029 SLC51BQ86UW2 128 aa14.02□□□□□ -0.17
VPS53-216ENST00000574029 PTH2Q96A98 100 aa14.02□□□□□ -0.17
VPS53-216ENST00000574029 GTSF1LQ9H1H1 148 aa14.02□□□□□ -0.17
VPS53-216ENST00000574029 IGHV3-73A0A0B4J1V6 119 aa14.01□□□□□ -0.17
VPS53-216ENST00000574029 FAM74A7A6NL05 159 aa14.01□□□□□ -0.17
VPS53-216ENST00000574029 K7EQM0 130 aa14.01□□□□□ -0.17
VPS53-216ENST00000574029 ATP6V0E2Q8NHE4 81 aa14.01□□□□□ -0.17
VPS53-216ENST00000574029 FAM213BQ8TBF2 198 aa14.01□□□□□ -0.17
VPS53-216ENST00000574029 PGPEP1LA6NFU8 196 aa14□□□□□ -0.17
VPS53-216ENST00000574029 RAB5CP51148 216 aa14□□□□□ -0.17
VPS53-216ENST00000574029 C9orf62Q8N4C0 152 aa14□□□□□ -0.17
VPS53-216ENST00000574029 SFT2D1Q8WV19 159 aa14□□□□□ -0.17
VPS53-216ENST00000574029 ARL2-SNX15V9GYD0 113 aa14□□□□□ -0.17
VPS53-216ENST00000574029 GCGP01275 180 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 IGLV2-11P01706 119 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 MGST1P10620 155 aaKnown RBP13.99□□□□□ -0.17
VPS53-216ENST00000574029 UBE2G2P60604 165 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 ZFP69Q49AA0 526 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 ZNF506Q5JVG8 444 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 CYB561D1Q8N8Q1 229 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 TM2D2Q9BX73 214 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 PSG8Q9UQ74 426 aa13.99□□□□□ -0.17
VPS53-216ENST00000574029 H2AFB1P0C5Y9 115 aa13.98□□□□□ -0.17
VPS53-216ENST00000574029 RNASE3P12724 160 aaKnown RBP13.98□□□□□ -0.17
VPS53-216ENST00000574029 TMEM75Q8N9X5 138 aa13.98□□□□□ -0.17
VPS53-216ENST00000574029 WFDC2Q14508 124 aa13.97□□□□□ -0.17
VPS53-216ENST00000574029 HIST1H2BAQ96A08 127 aa13.97□□□□□ -0.17
VPS53-216ENST00000574029 TCEAL7Q9BRU2 100 aa13.97□□□□□ -0.17
VPS53-216ENST00000574029 TRAV1-1A0A0B4J248 108 aa13.96□□□□□ -0.17
VPS53-216ENST00000574029 IFNA7P01567 189 aa13.96□□□□□ -0.17
VPS53-216ENST00000574029 SULT1A2P50226 295 aa13.96□□□□□ -0.17
VPS53-216ENST00000574029 Q6ZSA8 131 aa13.96□□□□□ -0.17
VPS53-216ENST00000574029 Q8N3U1 123 aa13.96□□□□□ -0.17
VPS53-216ENST00000574029 DNAH8Q96JB1 4490 aa13.95□□□□□ -0.18
VPS53-216ENST00000574029 LINC00694P0DN24 101 aa13.95□□□□□ -0.18
VPS53-216ENST00000574029 FLI1Q01543 452 aaPredicted RBP13.95□□□□□ -0.18
VPS53-216ENST00000574029 SMUG1Q53HV7 270 aa13.95□□□□□ -0.18
VPS53-216ENST00000574029 J3QL48 77 aa13.94□□□□□ -0.18
VPS53-216ENST00000574029 PEX7O00628 323 aa13.94□□□□□ -0.18
VPS53-216ENST00000574029 SAPCD1Q5SSQ6 148 aa13.94□□□□□ -0.18
VPS53-216ENST00000574029 ZFP2Q6ZN57 461 aa13.94□□□□□ -0.18
VPS53-216ENST00000574029 LINC00479Q96M42 142 aa13.94□□□□□ -0.18
VPS53-216ENST00000574029 PARLQ9H300 379 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms