RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NXPH4O95158 308 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 SLC25A16P16260 332 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 PLNP26678 52 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 FXYD2P54710 66 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 POM121L12Q8N7R1 296 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 MAPKAPK5-AS1Q8N8E1 139 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 DCANP1Q8TF63 244 aa17.1■□□□□ 0.33
VPS53-211ENST00000571805 DOPEY1Q5JWR5 2465 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 H7C1H1 209 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 MGPP08493 103 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 GCSHP23434 173 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 OCIAD2Q56VL3 154 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.09■□□□□ 0.339e-6■■□□□ 12.8
VPS53-211ENST00000571805 PSMB8P28062 276 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 GTF2H5Q6ZYL4 71 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 SCGB3A1Q96QR1 104 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 KIF25-AS1Q9Y6Z4 181 aa17.09■□□□□ 0.33
VPS53-211ENST00000571805 F8VRH5 84 aa17.08■□□□□ 0.33
VPS53-211ENST00000571805 K7EP34 96 aa17.08■□□□□ 0.32
VPS53-211ENST00000571805 LINC00315P59091 139 aa17.08■□□□□ 0.32
VPS53-211ENST00000571805 NEXN-AS1Q8NBZ9 246 aa17.08■□□□□ 0.32
VPS53-211ENST00000571805 SMIM13P0DJ93 91 aa17.07■□□□□ 0.32
VPS53-211ENST00000571805 USP9XQ93008 2570 aaPredicted RBP17.07■□□□□ 0.32
VPS53-211ENST00000571805 ID1P41134 155 aa17.07■□□□□ 0.32
VPS53-211ENST00000571805 TM2D2Q9BX73 214 aa17.07■□□□□ 0.32
VPS53-211ENST00000571805 A0A1W2PPM0 123 aa17.06■□□□□ 0.32
VPS53-211ENST00000571805 IGHV4-59P01825 116 aa17.06■□□□□ 0.32
VPS53-211ENST00000571805 PIEZO1Q92508 2521 aa17.05■□□□□ 0.32
VPS53-211ENST00000571805 CSPG4Q6UVK1 2322 aa17.05■□□□□ 0.32
VPS53-211ENST00000571805 GATA3P23771 443 aa17.05■□□□□ 0.32
VPS53-211ENST00000571805 C2orf66Q6UXQ4 117 aa17.05■□□□□ 0.32
VPS53-211ENST00000571805 NRGNQ92686 78 aa17.05■□□□□ 0.32
VPS53-211ENST00000571805 CHTOPQ9Y3Y2 248 aaKnown RBP17.05■□□□□ 0.32
VPS53-211ENST00000571805 PPP1R17O96001 155 aa17.04■□□□□ 0.32
VPS53-211ENST00000571805 DEFB112Q30KQ8 113 aa17.04■□□□□ 0.32
VPS53-211ENST00000571805 C10orf99Q6UWK7 81 aa17.04■□□□□ 0.32
VPS53-211ENST00000571805 CEND1Q8N111 149 aa17.04■□□□□ 0.32
VPS53-211ENST00000571805 IGSF10Q6WRI0 2623 aa17.04■□□□□ 0.32
VPS53-211ENST00000571805 CSTL1Q9H114 145 aa17.04■□□□□ 0.32
VPS53-211ENST00000571805 CRYBG3Q68DQ2 2970 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 UTP20O75691 2785 aaKnown RBP17.03■□□□□ 0.32
VPS53-211ENST00000571805 SAMD13Q5VXD3 122 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 FAM159AQ6UWV7 190 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 PHLDA1Q8WV24 401 aaPredicted RBP17.03■□□□□ 0.32
VPS53-211ENST00000571805 WFDC12Q8WWY7 111 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 IGHV4OR15-8A0A075B7B6 117 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 A0A087WW49 117 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 BAALCQ8WXS3 180 aa17.03■□□□□ 0.32
VPS53-211ENST00000571805 DSCR9P59020 149 aa17.02■□□□□ 0.32
VPS53-211ENST00000571805 RNF151Q2KHN1 245 aa17.02■□□□□ 0.32
VPS53-211ENST00000571805 PCP4P48539 62 aa17.02■□□□□ 0.31
VPS53-211ENST00000571805 JPT2Q9H910 190 aa17.02■□□□□ 0.31
VPS53-211ENST00000571805 SAMD5Q5TGI4 173 aa17.01■□□□□ 0.31
VPS53-211ENST00000571805 CACNA1AO00555 2505 aa17.01■□□□□ 0.31
VPS53-211ENST00000571805 TRAV12-3A0A0B4J271 114 aa17.01■□□□□ 0.31
VPS53-211ENST00000571805 K7ERJ3 54 aa17■□□□□ 0.31
VPS53-211ENST00000571805 RPL32P62910 135 aaKnown RBP17■□□□□ 0.31
VPS53-211ENST00000571805 TAL2Q16559 108 aa17■□□□□ 0.31
VPS53-211ENST00000571805 NEGR1Q7Z3B1 354 aa17■□□□□ 0.31
VPS53-211ENST00000571805 SPCS1Q9Y6A9 102 aa17■□□□□ 0.31
VPS53-211ENST00000571805 TMEM89A2RUT3 159 aa16.99■□□□□ 0.31
VPS53-211ENST00000571805 PRSS29PA6NIE9 313 aa16.99■□□□□ 0.31
VPS53-211ENST00000571805 CD7P09564 240 aa16.99■□□□□ 0.31
VPS53-211ENST00000571805 FABP2P12104 132 aa16.99■□□□□ 0.31
VPS53-211ENST00000571805 POLR2KP53803 58 aaKnown RBP16.99■□□□□ 0.31
VPS53-211ENST00000571805 SUMO4Q6EEV6 95 aa16.99■□□□□ 0.31
VPS53-211ENST00000571805 LINC01356Q8N9X3 169 aa16.99■□□□□ 0.31
VPS53-211ENST00000571805 NHP2Q9NX24 153 aaKnown RBP16.99■□□□□ 0.31
VPS53-211ENST00000571805 ZNF688P0C7X2 276 aa16.98■□□□□ 0.31
VPS53-211ENST00000571805 CSMD2Q7Z408 3487 aa16.98■□□□□ 0.31
VPS53-211ENST00000571805 A0A096LNT2 108 aa16.97■□□□□ 0.31
VPS53-211ENST00000571805 OR5A1Q8NGJ0 315 aa16.97■□□□□ 0.31
VPS53-211ENST00000571805 ODF3Q96PU9 254 aa16.97■□□□□ 0.31
VPS53-211ENST00000571805 AGRNO00468 2067 aa16.97■□□□□ 0.31
VPS53-211ENST00000571805 A0A0J9YX75 114 aa16.96■□□□□ 0.31
VPS53-211ENST00000571805 OR11H12B2RN74 326 aa16.96■□□□□ 0.31
VPS53-211ENST00000571805 DUSP14O95147 198 aaKnown RBP16.96■□□□□ 0.31
VPS53-211ENST00000571805 OR11H1Q8NG94 326 aa16.96■□□□□ 0.31
VPS53-211ENST00000571805 OR11H2Q8NH07 326 aa16.96■□□□□ 0.31
VPS53-211ENST00000571805 A0A087WWL8 130 aa16.96■□□□□ 0.31
VPS53-211ENST00000571805 MYMXA0A1B0GTQ4 84 aa16.96■□□□□ 0.31
VPS53-211ENST00000571805 K7EQG2 157 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 CRYGDP07320 174 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 IGHV3-16A0A0C4DH30 117 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 LINC01619G3V211 115 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 K7ERU9 68 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 TSHBP01222 138 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 C9orf85Q96MD7 179 aa16.95■□□□□ 0.3
VPS53-211ENST00000571805 TRBV7-3A0A075B6L6 115 aa16.94■□□□□ 0.3
VPS53-211ENST00000571805 E9PLD3 99 aa16.94■□□□□ 0.3
VPS53-211ENST00000571805 C21orf62-AS1Q17RA5 79 aa16.94■□□□□ 0.3
VPS53-211ENST00000571805 ZFP2Q6ZN57 461 aa16.94■□□□□ 0.3
VPS53-211ENST00000571805 CYSLTR1Q9Y271 337 aa16.94■□□□□ 0.3
VPS53-211ENST00000571805 SAP30O75446 220 aa16.94■□□□□ 0.3
VPS53-211ENST00000571805 TRAV12-2A0A075B6T6 113 aa16.93■□□□□ 0.3
VPS53-211ENST00000571805 IGIPA6NJ69 53 aa16.93■□□□□ 0.3
VPS53-211ENST00000571805 SNRPD3P62318 126 aaKnown RBP16.93■□□□□ 0.3
VPS53-211ENST00000571805 HIST1H4GQ99525 98 aa16.93■□□□□ 0.3
VPS53-211ENST00000571805 MDFICQ9P1T7 246 aa16.93■□□□□ 0.3
VPS53-211ENST00000571805 LGALS9O00182 355 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms