RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PRR27Q6MZM9 219 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 BIN3Q9NQY0 253 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 MED9Q9NWA0 146 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 HHLA3Q9XRX5 114 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 BOLA1Q9Y3E2 137 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 A8MWV9 139 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 CXCL1P09341 107 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 SFTA3P0C7M3 94 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 CRIP1P50238 77 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 CRYBA4P53673 196 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 FHL2Q14192 279 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 ZNF506Q5JVG8 444 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 ZNF479Q96JC4 524 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 DERL1Q9BUN8 251 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 MLST8Q9BVC4 326 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 PHLDA3Q9Y5J5 127 aa9.06□□□□□ -0.96
CLK3-224ENST00000568605 TMSB15BA0A087X1C1 80 aa9.05□□□□□ -0.96
CLK3-224ENST00000568605 MED14OSP0DP75 135 aa9.05□□□□□ -0.96
CLK3-224ENST00000568605 MGST1P10620 155 aaKnown RBP9.05□□□□□ -0.96
CLK3-224ENST00000568605 MRPL23Q16540 153 aaKnown RBP9.05□□□□□ -0.96
CLK3-224ENST00000568605 LYPD6BQ8NI32 183 aa9.05□□□□□ -0.96
CLK3-224ENST00000568605 VSIG2Q96IQ7 327 aa9.05□□□□□ -0.96
CLK3-224ENST00000568605 A0A096LPF7 62 aa9.04□□□□□ -0.96
CLK3-224ENST00000568605 SRIP30626 198 aa9.04□□□□□ -0.96
CLK3-224ENST00000568605 ZFP82Q8N141 532 aa9.04□□□□□ -0.96
CLK3-224ENST00000568605 DAZAP1Q96EP5 407 aaKnown RBP9.04□□□□□ -0.96
CLK3-224ENST00000568605 GRIFINA4D1Z8 144 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 RBFOX3A6NFN3 312 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 PGPEP1LA6NFU8 196 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 TMEM250H0YL14 139 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 RHODO00212 210 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 RS1O15537 224 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 ARMS2P0C7Q2 107 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 RHOHQ15669 191 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 CFAP126Q5VTH2 177 aa9.03□□□□□ -0.96
CLK3-224ENST00000568605 XKRY2A2RUG3 117 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 NDUFS6O75380 124 aaKnown RBP9.02□□□□□ -0.97
CLK3-224ENST00000568605 GYPEP15421 78 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 TOR2AQ5JU69 321 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 ZFP2Q6ZN57 461 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 NEGR1Q7Z3B1 354 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 SH2D6Q7Z4S9 175 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 PRADC1Q9BSG0 188 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 EIF5A2Q9GZV4 153 aaKnown RBP9.02□□□□□ -0.97
CLK3-224ENST00000568605 MRPS16Q9Y3D3 137 aaKnown RBP9.02□□□□□ -0.97
CLK3-224ENST00000568605 LINC00588Q9Y4M8 146 aa9.02□□□□□ -0.97
CLK3-224ENST00000568605 IGLV2-18A0A075B6J9 118 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 TRBV6-4A0A1B0GX49 114 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 RAB19A4D1S5 217 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 M0R381 172 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 P01737 135 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 GATA1P15976 413 aaPredicted RBP9.01□□□□□ -0.97
CLK3-224ENST00000568605 RPS20P60866 119 aaKnown RBP9.01□□□□□ -0.97
CLK3-224ENST00000568605 KMT2AQ03164 3969 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 TTC32Q5I0X7 151 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 TEX261Q6UWH6 196 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 FAM210AQ96ND0 272 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 UPK3BQ9BT76 320 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 PARLQ9H300 379 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 SCRT2Q9NQ03 307 aa9.01□□□□□ -0.97
CLK3-224ENST00000568605 K7EQD1 137 aa9□□□□□ -0.97
CLK3-224ENST00000568605 RPL19P84098 196 aaKnown RBP9□□□□□ -0.97
CLK3-224ENST00000568605 SOHLH1Q5JUK2 328 aa9□□□□□ -0.97
CLK3-224ENST00000568605 ZNRF2Q8NHG8 242 aa9□□□□□ -0.97
CLK3-224ENST00000568605 TRBV20OR9-2A0A075B6H5 130 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 IGHV3-73A0A0B4J1V6 119 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 M0R2N4 97 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 IGLV2-8P01709 118 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 OR5AL1P0C617 328 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 CEBPGP53567 150 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 ESRGQ1W209 222 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 FAM74A4Q5TZK3 123 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 SLC25A29Q8N8R3 303 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 OR2D3Q8NGH3 330 aa8.99□□□□□ -0.97
CLK3-224ENST00000568605 SNAI2O43623 268 aa8.98□□□□□ -0.97
CLK3-224ENST00000568605 NXPH4O95158 308 aa8.98□□□□□ -0.97
CLK3-224ENST00000568605 SPANXN1Q5VSR9 72 aa8.98□□□□□ -0.97
CLK3-224ENST00000568605 DMRTA1Q5VZB9 504 aa8.98□□□□□ -0.97
CLK3-224ENST00000568605 SFRP2Q96HF1 295 aa8.98□□□□□ -0.97
CLK3-224ENST00000568605 Q9H8V8 135 aa8.98□□□□□ -0.97
CLK3-224ENST00000568605 NBDYA0A0U1RRE5 68 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 C19orf71A6NCJ1 209 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 Q6ZR54 194 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 LINC00336Q6ZUF6 198 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 FER1L6-AS1Q8NA97 138 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 OR10AG1Q8NH19 301 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 AP1S3Q96PC3 154 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 SMIM7Q9BQ49 75 aa8.97□□□□□ -0.97
CLK3-224ENST00000568605 A0A1W2PPQ1 181 aa8.96□□□□□ -0.98
CLK3-224ENST00000568605 SIVA1O15304 175 aa8.96□□□□□ -0.98
CLK3-224ENST00000568605 TPPP3Q9BW30 176 aa8.96□□□□□ -0.98
CLK3-224ENST00000568605 SSBP4Q9BWG4 385 aaPredicted RBP8.96□□□□□ -0.98
CLK3-224ENST00000568605 LY96Q9Y6Y9 160 aa8.96□□□□□ -0.98
CLK3-224ENST00000568605 A0A087WWL8 130 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 ZNF727A8MUV8 499 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 F2Z2F3 143 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 SMIM17P0DL12 118 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 CACNG7P62955 275 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 C1orf134Q5TEV5 83 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 LYPD5Q6UWN5 251 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms