RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 STPG4Q8N801 248 aa15.11■□□□□ 0.01
CLN3-230ENST00000568076 TMEM158Q8WZ71 300 aa15.11■□□□□ 0.01
CLN3-230ENST00000568076 ODF3Q96PU9 254 aa15.11■□□□□ 0.01
CLN3-230ENST00000568076 TLN2Q9Y4G6 2542 aa15.1■□□□□ 0.01
CLN3-230ENST00000568076 C7orf71A4D174 169 aa15.1■□□□□ 0.01
CLN3-230ENST00000568076 NXPH4O95158 308 aa15.1■□□□□ 0.01
CLN3-230ENST00000568076 FAM159AQ6UWV7 190 aa15.1■□□□□ 0.01
CLN3-230ENST00000568076 CD5LO43866 347 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 HIST2H2BDQ6DRA6 164 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 RASL10AQ92737 203 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 TRAV12-2A0A075B6T6 113 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 TCAPO15273 167 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 SLC25A34Q6PIV7 304 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 DUX3Q96PT4 197 aa15.09■□□□□ 0.01
CLN3-230ENST00000568076 MUC4Q99102 2169 aa15.08■□□□□ 0
CLN3-230ENST00000568076 PLA2G2AP14555 144 aa15.08■□□□□ 0
CLN3-230ENST00000568076 HINT1P49773 126 aaPredicted RBP15.08■□□□□ 0
CLN3-230ENST00000568076 TMEM86BQ8N661 226 aa15.08■□□□□ 0
CLN3-230ENST00000568076 OR11H1Q8NG94 326 aa15.08■□□□□ 0
CLN3-230ENST00000568076 PDZD2O15018 2839 aa15.08■□□□□ 0
CLN3-230ENST00000568076 LINC01619G3V211 115 aa15.07■□□□□ 0
CLN3-230ENST00000568076 COL5A1-AS1Q5SY13 56 aa15.07■□□□□ 0
CLN3-230ENST00000568076 Q6ZSV7 163 aa15.07■□□□□ 0
CLN3-230ENST00000568076 CD7P09564 240 aa15.07■□□□□ 0
CLN3-230ENST00000568076 LAGE3Q14657 143 aa15.07■□□□□ 0
CLN3-230ENST00000568076 ANKRD39Q53RE8 183 aa15.07■□□□□ 0
CLN3-230ENST00000568076 C4orf3Q8WVX3 66 aa15.07■□□□□ 0
CLN3-230ENST00000568076 RPL39LQ96EH5 51 aaKnown RBP15.07■□□□□ 0
CLN3-230ENST00000568076 AP1S3Q96PC3 154 aa15.07■□□□□ 0
CLN3-230ENST00000568076 SMIM2Q9BVW6 85 aa15.07■□□□□ 0
CLN3-230ENST00000568076 DKK2Q9UBU2 259 aa15.07■□□□□ 0
CLN3-230ENST00000568076 DPF1Q92782 380 aa15.06■□□□□ 0
CLN3-230ENST00000568076 KIF25-AS1Q9Y6Z4 181 aa15.06■□□□□ 0
CLN3-230ENST00000568076 DNAJC9-AS1A6NH13 148 aa15.05■□□□□ 0
CLN3-230ENST00000568076 MGPP08493 103 aa15.05■□□□□ 0
CLN3-230ENST00000568076 SMIM17P0DL12 118 aa15.05■□□□□ 0
CLN3-230ENST00000568076 LINC00315P59091 139 aa15.05■□□□□ 0
CLN3-230ENST00000568076 SPINK13Q1W4C9 94 aa15.05■□□□□ 0
CLN3-230ENST00000568076 AKAP9Q99996 3911 aa15.05■□□□□ 0
CLN3-230ENST00000568076 KMT2BQ9UMN6 2715 aaPredicted RBP15.05■□□□□ 0
CLN3-230ENST00000568076 FLNAP21333 2647 aaKnown RBP15.05■□□□□ -0
CLN3-230ENST00000568076 MYO9AB2RTY4 2548 aa15.05■□□□□ -0
CLN3-230ENST00000568076 AGRNO00468 2067 aa15.05■□□□□ -0
CLN3-230ENST00000568076 CDKN1BP46527 198 aa15.05■□□□□ -0
CLN3-230ENST00000568076 KRTAP1-1Q07627 177 aa15.05■□□□□ -0
CLN3-230ENST00000568076 AMTNQ6UX39 209 aa15.05■□□□□ -0
CLN3-230ENST00000568076 FOXI2Q6ZQN5 318 aa15.05■□□□□ -0
CLN3-230ENST00000568076 POM121L12Q8N7R1 296 aa15.05■□□□□ -0
CLN3-230ENST00000568076 JPT2Q9H910 190 aa15.05■□□□□ -0
CLN3-230ENST00000568076 SONP18583 2426 aaKnown RBP15.04■□□□□ -0
CLN3-230ENST00000568076 CCDC168Q8NDH2 2452 aa15.04■□□□□ -0
CLN3-230ENST00000568076 COX8AP10176 69 aa15.04■□□□□ -0
CLN3-230ENST00000568076 SUMO2P61956 95 aaKnown RBP15.04■□□□□ -0
CLN3-230ENST00000568076 ODF1Q14990 250 aa15.04■□□□□ -0
CLN3-230ENST00000568076 KHDC1LQ5JSQ8 128 aa15.04■□□□□ -0
CLN3-230ENST00000568076 OR1N2Q8NGR9 330 aa15.04■□□□□ -0
CLN3-230ENST00000568076 ESM1Q9NQ30 184 aa15.04■□□□□ -0
CLN3-230ENST00000568076 OR9G4Q8NGQ1 327 aa15.04■□□□□ -0
CLN3-230ENST00000568076 IGHV3-16A0A0C4DH30 117 aa15.03■□□□□ -0
CLN3-230ENST00000568076 J3QKU1 62 aa15.03■□□□□ -0
CLN3-230ENST00000568076 DUSP14O95147 198 aaKnown RBP15.03■□□□□ -0
CLN3-230ENST00000568076 TEX29Q8N6K0 151 aa15.03■□□□□ -0
CLN3-230ENST00000568076 DLX4Q92988 240 aaPredicted RBP15.03■□□□□ -0
CLN3-230ENST00000568076 C20orf78Q9BR46 151 aa15.03■□□□□ -0
CLN3-230ENST00000568076 MDFICQ9P1T7 246 aa15.03■□□□□ -0
CLN3-230ENST00000568076 KLHL30-AS1Q8NEE0 82 aa15.02■□□□□ -0
CLN3-230ENST00000568076 C9orf85Q96MD7 179 aa15.02■□□□□ -0
CLN3-230ENST00000568076 FGF6P10767 208 aa15.02□□□□□ -0.01
CLN3-230ENST00000568076 Q8N1Y9 231 aa15.02□□□□□ -0.01
CLN3-230ENST00000568076 ZMAT4Q9H898 229 aa15.02□□□□□ -0.01
CLN3-230ENST00000568076 CUBNO60494 3623 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 KNCNA6PVL3 124 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 PRSS1P07477 247 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 G0S2P27469 103 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 TCTAP57738 103 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 MPV17L2Q567V2 206 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 SORL1Q92673 2214 aa15.01□□□□□ -0.01
CLN3-230ENST00000568076 ZNF25P17030 456 aaPredicted RBP15□□□□□ -0.01
CLN3-230ENST00000568076 C2orf91Q6ZV80 131 aa15□□□□□ -0.01
CLN3-230ENST00000568076 TMEM61Q8N0U2 210 aa15□□□□□ -0.01
CLN3-230ENST00000568076 PEMTQ9UBM1 199 aa15□□□□□ -0.01
CLN3-230ENST00000568076 IGHV1OR15-1A0A075B7D0 117 aa15□□□□□ -0.01
CLN3-230ENST00000568076 DEFB131AP59861 70 aa15□□□□□ -0.01
CLN3-230ENST00000568076 FOXC2Q99958 501 aa15□□□□□ -0.01
CLN3-230ENST00000568076 ATP5LO75964 103 aa14.99□□□□□ -0.01
CLN3-230ENST00000568076 NUDT3O95989 172 aa14.99□□□□□ -0.01
CLN3-230ENST00000568076 A0A087WWL8 130 aa14.98□□□□□ -0.01
CLN3-230ENST00000568076 RBMY1A1P0DJD3 496 aaKnown RBP14.98□□□□□ -0.01
CLN3-230ENST00000568076 RBMY1CP0DJD4 496 aa14.98□□□□□ -0.01
CLN3-230ENST00000568076 RBMY1FQ15415 496 aaKnown RBP14.98□□□□□ -0.01
CLN3-230ENST00000568076 ZNF124Q15973 351 aa14.98□□□□□ -0.01
CLN3-230ENST00000568076 TMEM208Q9BTX3 173 aa14.98□□□□□ -0.01
CLN3-230ENST00000568076 HHLA3Q9XRX5 114 aa14.98□□□□□ -0.01
CLN3-230ENST00000568076 ORMDL2Q53FV1 153 aa14.97□□□□□ -0.01
CLN3-230ENST00000568076 TRAV2A0A0B4J234 112 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 A8MTW9 85 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 SUMO4Q6EEV6 95 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 RBMY1BA6NDE4 496 aaKnown RBP14.96□□□□□ -0.01
CLN3-230ENST00000568076 RBMY1EA6NEQ0 496 aaKnown RBP14.96□□□□□ -0.01
CLN3-230ENST00000568076 RBMY1DP0C7P1 496 aaKnown RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms