RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SPRY2O43597 315 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 RNASE3P12724 160 aaKnown RBP9.29□□□□□ -0.92
CLK3-214ENST00000564096 MIFP14174 115 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 HBBP68871 147 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 ELOBQ15370 118 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 COX19Q49B96 90 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 RNASE8Q8TDE3 154 aaKnown RBP9.29□□□□□ -0.92
CLK3-214ENST00000564096 C9orf85Q96MD7 179 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 SPXQ9BT56 116 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 SSBP4Q9BWG4 385 aaPredicted RBP9.29□□□□□ -0.92
CLK3-214ENST00000564096 CNFNQ9BYD5 112 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 TP53TG3Q9ULZ0 132 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 MGAM2Q2M2H8 2515 aa9.29□□□□□ -0.92
CLK3-214ENST00000564096 MRPL54Q6P161 138 aaKnown RBP9.28□□□□□ -0.92
CLK3-214ENST00000564096 WDR73Q6P4I2 378 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 RASL11AQ6T310 242 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 SMIM15Q7Z3B0 74 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 OR11H2Q8NH07 326 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 SPATA25Q9BR10 227 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 NDUFAF3Q9BU61 184 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 SCRT2Q9NQ03 307 aa9.28□□□□□ -0.92
CLK3-214ENST00000564096 M0R381 172 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 TRGC1P0CF51 173 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 C11orf72Q8NBR9 251 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 OR10AG1Q8NH19 301 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 FAM210BQ96KR6 192 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 AP1S3Q96PC3 154 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 GSN-AS1Q9NRJ2 163 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 MDFICQ9P1T7 246 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 X6R8D5 127 aa9.27□□□□□ -0.93
CLK3-214ENST00000564096 TGIF2-C20orf24A0A0A6YYL0 155 aa9.26□□□□□ -0.93
CLK3-214ENST00000564096 M0R2P5 195 aa9.26□□□□□ -0.93
CLK3-214ENST00000564096 SPINK4O60575 86 aa9.26□□□□□ -0.93
CLK3-214ENST00000564096 NXPH4O95158 308 aa9.26□□□□□ -0.93
CLK3-214ENST00000564096 TWIST1Q15672 202 aa9.26□□□□□ -0.93
CLK3-214ENST00000564096 PIK3CD-AS1Q5SR53 167 aa9.26□□□□□ -0.93
CLK3-214ENST00000564096 NBEAL1Q6ZS30 2694 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 IGHV4-4A0A075B6R2 117 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 TEX48A0A1B0GUV7 120 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 MT-ND6P03923 174 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 RAB4BP61018 213 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 DAZ2Q13117 558 aaKnown RBP9.25□□□□□ -0.93
CLK3-214ENST00000564096 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.25□□□□□ -0.93
CLK3-214ENST00000564096 IL17DQ8TAD2 202 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 PTH2Q96A98 100 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 YPEL4Q96NS1 127 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 ZMAT4Q9H898 229 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 PKD1L1Q8TDX9 2849 aa9.25□□□□□ -0.93
CLK3-214ENST00000564096 MUC21A0A0G2JKD1 596 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 MUC21A0A140T8X8 626 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 A0A1B0GXF2 115 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 HLA-DQA1P01909 254 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 SMIM17P0DL12 118 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 AZU1P20160 251 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 NTF3P20783 257 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 CAMPP49913 170 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 LGALS9BQ3B8N2 356 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 ZNF876PQ49A33 203 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 ZNF575Q86XF7 245 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 OVOL2Q9BRP0 275 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 DNAH3Q8TD57 4116 aa9.24□□□□□ -0.93
CLK3-214ENST00000564096 TRGV1A0A0A0MS02 117 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 IGHV4-28A0A0C4DH34 117 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 PRM2P04554 102 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 RAB5AP20339 215 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 EMP1P54849 157 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 SSTP61278 116 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 SBSPONQ8IVN8 264 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 Q8NAQ8 132 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 TM2D3Q9BRN9 247 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 C11orf68Q9H3H3 251 aaKnown RBP9.23□□□□□ -0.93
CLK3-214ENST00000564096 RETNQ9HD89 108 aa9.23□□□□□ -0.93
CLK3-214ENST00000564096 NOP10Q9NPE3 64 aaKnown RBP9.23□□□□□ -0.93
CLK3-214ENST00000564096 COLCA2A8K830 154 aa9.22□□□□□ -0.93
CLK3-214ENST00000564096 LYRM9A8MSI8 78 aa9.22□□□□□ -0.93
CLK3-214ENST00000564096 A8MWV9 139 aa9.22□□□□□ -0.93
CLK3-214ENST00000564096 B9D2Q9BPU9 175 aa9.22□□□□□ -0.93
CLK3-214ENST00000564096 GNB1LQ9BYB4 327 aa9.22□□□□□ -0.93
CLK3-214ENST00000564096 MRPL16Q9NX20 251 aaKnown RBP9.22□□□□□ -0.93
CLK3-214ENST00000564096 PLAC8L1A1L4L8 177 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 RHODO00212 210 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 RPS10P46783 165 aaKnown RBP9.21□□□□□ -0.94
CLK3-214ENST00000564096 GATD1Q8NB37 220 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 RASL10AQ92737 203 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 FRZBQ92765 325 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 TMEM191AQ9H0A3 160 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 DPH3P1Q9H4G8 78 aa9.21□□□□□ -0.94
CLK3-214ENST00000564096 NOTCH1P46531 2555 aa9.2□□□□□ -0.94
CLK3-214ENST00000564096 TRGV2A0A075B6R0 118 aa9.2□□□□□ -0.94
CLK3-214ENST00000564096 DEFA6Q01524 100 aa9.2□□□□□ -0.94
CLK3-214ENST00000564096 TRAPPC1Q9Y5R8 145 aa9.2□□□□□ -0.94
CLK3-214ENST00000564096 MGPP08493 103 aa9.19□□□□□ -0.94
CLK3-214ENST00000564096 SPART-AS1P0CW21 52 aa9.19□□□□□ -0.94
CLK3-214ENST00000564096 FAM74A4Q5TZK3 123 aa9.19□□□□□ -0.94
CLK3-214ENST00000564096 TMEM136Q6ZRR5 245 aa9.19□□□□□ -0.94
CLK3-214ENST00000564096 Q6ZTI0 123 aa9.19□□□□□ -0.94
CLK3-214ENST00000564096 MSRB1Q9NZV6 116 aa9.19□□□□□ -0.94
CLK3-214ENST00000564096 TRAV4A0A0B4J268 109 aa9.18□□□□□ -0.94
CLK3-214ENST00000564096 GAGE12BA1L429 117 aa9.18□□□□□ -0.94
CLK3-214ENST00000564096 CIDEAO60543 219 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms