RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 PRIMA1Q86XR5 153 aa13.31□□□□□ -0.28
COMMD4-208ENST00000563220 C20orf144Q9BQM9 153 aa13.31□□□□□ -0.28
COMMD4-208ENST00000563220 OR11H12B2RN74 326 aa13.3□□□□□ -0.28
COMMD4-208ENST00000563220 CRXO43186 299 aaPredicted RBP13.3□□□□□ -0.28
COMMD4-208ENST00000563220 CD7P09564 240 aa13.3□□□□□ -0.28
COMMD4-208ENST00000563220 BEAN1Q3B7T3 259 aa13.3□□□□□ -0.28
COMMD4-208ENST00000563220 SNAI2O43623 268 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 OR5AL1P0C617 328 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 TWIST1Q15672 202 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 ZNF493Q6ZR52 646 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 H3BVH4 76 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 OR10AG1Q8NH19 301 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 C18orf32Q8TCD1 76 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 RCHY1Q96PM5 261 aa13.29□□□□□ -0.28
COMMD4-208ENST00000563220 SPRY2O43597 315 aa13.28□□□□□ -0.28
COMMD4-208ENST00000563220 RBMY1A1P0DJD3 496 aaKnown RBP13.28□□□□□ -0.28
COMMD4-208ENST00000563220 RBMY1CP0DJD4 496 aa13.28□□□□□ -0.28
COMMD4-208ENST00000563220 RBMY1FQ15415 496 aaKnown RBP13.28□□□□□ -0.28
COMMD4-208ENST00000563220 FAM159AQ6UWV7 190 aa13.28□□□□□ -0.28
COMMD4-208ENST00000563220 MRPL52Q86TS9 123 aaKnown RBP13.28□□□□□ -0.28
COMMD4-208ENST00000563220 C19orf73Q9NVV2 129 aa13.28□□□□□ -0.28
COMMD4-208ENST00000563220 TIMM8BQ9Y5J9 83 aaPredicted RBP13.28□□□□□ -0.28
COMMD4-208ENST00000563220 ASIPP42127 132 aa13.27□□□□□ -0.28
COMMD4-208ENST00000563220 AMTP48728 403 aa13.27□□□□□ -0.28
COMMD4-208ENST00000563220 ALKBH7Q9BT30 221 aaPredicted RBP13.27□□□□□ -0.28
COMMD4-208ENST00000563220 VWFP04275 2813 aa13.27□□□□□ -0.28
COMMD4-208ENST00000563220 LOC102724200A0A096LPH7 203 aaPredicted RBP13.27□□□□□ -0.29
COMMD4-208ENST00000563220 RNASE3P12724 160 aaKnown RBP13.27□□□□□ -0.29
COMMD4-208ENST00000563220 S100A4P26447 101 aaKnown RBP13.27□□□□□ -0.29
COMMD4-208ENST00000563220 TDRG1Q3Y452 100 aa13.27□□□□□ -0.29
COMMD4-208ENST00000563220 CMC4P56277 68 aaPredicted RBP13.26□□□□□ -0.29
COMMD4-208ENST00000563220 STHQ8IWL8 128 aa13.26□□□□□ -0.29
COMMD4-208ENST00000563220 Q8N976 141 aa13.26□□□□□ -0.29
COMMD4-208ENST00000563220 CLUHP3Q96NS8 147 aa13.26□□□□□ -0.29
COMMD4-208ENST00000563220 WFDC10AQ9H1F0 79 aa13.26□□□□□ -0.29
COMMD4-208ENST00000563220 FBN1P35555 2871 aaKnown RBP13.26□□□□□ -0.29
COMMD4-208ENST00000563220 IGHV4-4A0A075B6R2 117 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 AMN1Q8IY45 258 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 FAM110AQ9BQ89 295 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 SCRT2Q9NQ03 307 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 IGHV1OR15-1A0A075B7D0 117 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 FAM104BQ5XKR9 115 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 TRPT1Q86TN4 253 aaKnown RBP13.25□□□□□ -0.29
COMMD4-208ENST00000563220 NIT1Q86X76 327 aa13.25□□□□□ -0.29
COMMD4-208ENST00000563220 INSL3P51460 131 aa13.24□□□□□ -0.29
COMMD4-208ENST00000563220 C9orf66Q5T8R8 295 aa13.24□□□□□ -0.29
COMMD4-208ENST00000563220 SPANXN1Q5VSR9 72 aa13.24□□□□□ -0.29
COMMD4-208ENST00000563220 VAMP8Q9BV40 100 aa13.24□□□□□ -0.29
COMMD4-208ENST00000563220 TMEM191AQ9H0A3 160 aa13.24□□□□□ -0.29
COMMD4-208ENST00000563220 MAST4O15021 2626 aa13.24□□□□□ -0.29
COMMD4-208ENST00000563220 MED14OSP0DP75 135 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 PMCHP20382 165 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 CACNG7P62955 275 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 MIEN1Q9BRT3 115 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 ZNF747Q9BV97 191 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 A0A1B0GV90 55 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 KRTDAPP60985 99 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 Q8N1Y9 231 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 MDFICQ9P1T7 246 aa13.23□□□□□ -0.29
COMMD4-208ENST00000563220 IGHV3-16A0A0C4DH30 117 aa13.22□□□□□ -0.29
COMMD4-208ENST00000563220 RAB4AP20338 218 aa13.22□□□□□ -0.29
COMMD4-208ENST00000563220 WFDC9Q8NEX5 89 aa13.22□□□□□ -0.29
COMMD4-208ENST00000563220 RNF185Q96GF1 192 aa13.22□□□□□ -0.29
COMMD4-208ENST00000563220 PHLDA3Q9Y5J5 127 aa13.22□□□□□ -0.29
COMMD4-208ENST00000563220 TRRAPQ9Y4A5 3859 aa13.21□□□□□ -0.29
COMMD4-208ENST00000563220 M0R143 59 aa13.21□□□□□ -0.29
COMMD4-208ENST00000563220 M0R381 172 aa13.21□□□□□ -0.29
COMMD4-208ENST00000563220 EVI2AP22794 236 aa13.21□□□□□ -0.29
COMMD4-208ENST00000563220 MRPL51Q4U2R6 128 aaKnown RBP13.21□□□□□ -0.29
COMMD4-208ENST00000563220 DMRTA1Q5VZB9 504 aa13.21□□□□□ -0.29
COMMD4-208ENST00000563220 NOTCH3Q9UM47 2321 aa13.21□□□□□ -0.29
COMMD4-208ENST00000563220 PRM2P04554 102 aa13.21□□□□□ -0.3
COMMD4-208ENST00000563220 C3orf79P0CE67 100 aa13.21□□□□□ -0.3
COMMD4-208ENST00000563220 SNHG12Q9BXW3 62 aa13.21□□□□□ -0.3
COMMD4-208ENST00000563220 XCL2Q9UBD3 114 aa13.21□□□□□ -0.3
COMMD4-208ENST00000563220 EREGO14944 169 aa13.2□□□□□ -0.3
COMMD4-208ENST00000563220 HSBP1O75506 76 aa13.19□□□□□ -0.3
COMMD4-208ENST00000563220 C9orf85Q96MD7 179 aa13.19□□□□□ -0.3
COMMD4-208ENST00000563220 U3KQK5 164 aa13.19□□□□□ -0.3
COMMD4-208ENST00000563220 D6R8Y8 96 aa13.19□□□□□ -0.3
COMMD4-208ENST00000563220 HTN1P15515 57 aa13.19□□□□□ -0.3
COMMD4-208ENST00000563220 PAM16Q9Y3D7 125 aa13.19□□□□□ -0.3
COMMD4-208ENST00000563220 CBY3A6NI87 242 aa13.18□□□□□ -0.3
COMMD4-208ENST00000563220 INSP01308 110 aa13.18□□□□□ -0.3
COMMD4-208ENST00000563220 IGLL1P15814 213 aa13.18□□□□□ -0.3
COMMD4-208ENST00000563220 FAM19A2Q8N3H0 131 aa13.18□□□□□ -0.3
COMMD4-208ENST00000563220 DEFB125Q8N687 156 aa13.18□□□□□ -0.3
COMMD4-208ENST00000563220 C3orf56Q8N813 242 aa13.18□□□□□ -0.3
COMMD4-208ENST00000563220 SMKR1H3BMG3 65 aa13.17□□□□□ -0.3
COMMD4-208ENST00000563220 NXPH4O95158 308 aa13.17□□□□□ -0.3
COMMD4-208ENST00000563220 GIG44P09565 113 aaPredicted RBP13.17□□□□□ -0.3
COMMD4-208ENST00000563220 RPL35AP18077 110 aaKnown RBP13.17□□□□□ -0.3
COMMD4-208ENST00000563220 CHCHD1Q96BP2 118 aaKnown RBP13.17□□□□□ -0.3
COMMD4-208ENST00000563220 LINC01587Q99440 93 aa13.17□□□□□ -0.3
COMMD4-208ENST00000563220 MCRIP2Q9BUT9 160 aaKnown RBP13.17□□□□□ -0.3
COMMD4-208ENST00000563220 GAS8-AS1O95177 125 aa13.16□□□□□ -0.3
COMMD4-208ENST00000563220 NUTF2P61970 127 aaKnown RBP13.16□□□□□ -0.3
COMMD4-208ENST00000563220 PMCHL1Q16048 86 aa13.16□□□□□ -0.3
COMMD4-208ENST00000563220 C1orf158Q8N1D5 194 aa13.16□□□□□ -0.3
COMMD4-208ENST00000563220 URB1-AS1Q96HZ7 61 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms