RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TRBV6-4A0A1B0GX49 114 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 PGPEP1LA6NFU8 196 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 EREGO14944 169 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 ASIPP42127 132 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 RHOHQ15669 191 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 ZNF506Q5JVG8 444 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 CST9LP1Q5W188 147 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 WFDC10BQ8IUB3 73 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 TCEAL7Q9BRU2 100 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 ZFP30Q9Y2G7 519 aa11.48□□□□□ -0.57
CLK3-210ENST00000563112 IGHV3-73A0A0B4J1V6 119 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 A0A0D9SG52 128 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 HMSDA8MTL9 139 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 RNASE3P12724 160 aaKnown RBP11.47□□□□□ -0.57
CLK3-210ENST00000563112 FHITP49789 147 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 TIRAPP58753 221 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 DPPA3Q6W0C5 159 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 SLC25A29Q8N8R3 303 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 FMC1Q96HJ9 113 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 BOLA1Q9Y3E2 137 aa11.47□□□□□ -0.57
CLK3-210ENST00000563112 IGKV3D-20A0A0C4DH25 116 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 KANTRA0A1W2PQU2 76 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 B4DEV8 164 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 UMAD1C9J7I0 102 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 SEC11BP0C7V7 166 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 DNAH10OSP0CZ25 163 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 MGST1P10620 155 aaKnown RBP11.46□□□□□ -0.57
CLK3-210ENST00000563112 ERVFC1-1P60608 527 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 Q6ZRN7 208 aaPredicted RBP11.46□□□□□ -0.57
CLK3-210ENST00000563112 C10orf126Q8N4M7 172 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 KRTAP17-1Q9BYP8 105 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 MSRB1Q9NZV6 116 aa11.46□□□□□ -0.57
CLK3-210ENST00000563112 TRAV8-6A0A0B4J262 113 aa11.45□□□□□ -0.58
CLK3-210ENST00000563112 A8MWV9 139 aa11.45□□□□□ -0.58
CLK3-210ENST00000563112 CDK2AP2O75956 126 aa11.45□□□□□ -0.58
CLK3-210ENST00000563112 EIF5AP63241 154 aaKnown RBP11.45□□□□□ -0.58
CLK3-210ENST00000563112 LGALSLQ3ZCW2 172 aaPredicted RBP11.45□□□□□ -0.58
CLK3-210ENST00000563112 PIK3CD-AS1Q5SR53 167 aa11.45□□□□□ -0.58
CLK3-210ENST00000563112 SFT2D1Q8WV19 159 aa11.45□□□□□ -0.58
CLK3-210ENST00000563112 ZNF471Q9BX82 626 aaPredicted RBP11.45□□□□□ -0.58
CLK3-210ENST00000563112 TRBV6-1A0A0K0K1D8 114 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 CRYGDP07320 174 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 S100A1P23297 94 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 AKR1C3P42330 323 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 FAM162BQ5T6X4 162 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 ZFP2Q6ZN57 461 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 COX8CQ7Z4L0 72 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 SYT8Q8NBV8 401 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 FAM213BQ8TBF2 198 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 ZC2HC1AQ96GY0 325 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 IL36BQ9NZH7 164 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 TNFRSF18Q9Y5U5 241 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 PCLOQ9Y6V0 5065 aa11.44□□□□□ -0.58
CLK3-210ENST00000563112 LRP1BQ9NZR2 4599 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 BCL2L11O43521 198 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 PAGE4O60829 102 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 KRTAP10-2P60368 255 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 OR10J3Q5JRS4 329 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 OR11H4Q8NGC9 324 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 MBD3L1Q8WWY6 194 aa11.43□□□□□ -0.58
CLK3-210ENST00000563112 IGHV3-38A0A0C4DH36 116 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 KRBOX1C9JBD0 128 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 M0R036 132 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 SH2D1AO60880 128 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 ATP6V1G1O75348 118 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 S100A9P06702 114 aaKnown RBP11.42□□□□□ -0.58
CLK3-210ENST00000563112 CRIP1P50238 77 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 DNLZQ5SXM8 178 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 ATP6V0E2Q8NHE4 81 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 PARLQ9H300 379 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 PGPEP1Q9NXJ5 209 aa11.42□□□□□ -0.58
CLK3-210ENST00000563112 H3BVH4 76 aa11.41□□□□□ -0.58
CLK3-210ENST00000563112 ARMS2P0C7Q2 107 aa11.41□□□□□ -0.58
CLK3-210ENST00000563112 GTSF1LQ9H1H1 148 aa11.41□□□□□ -0.58
CLK3-210ENST00000563112 DNAH5Q8TE73 4624 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 A0A1B0GV50 99 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 GRIFINA4D1Z8 144 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 LTAP01374 205 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 H2AFB1P0C5Y9 115 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 TPT1P13693 172 aaKnown RBP11.4□□□□□ -0.58
CLK3-210ENST00000563112 ZNF674Q2M3X9 581 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 LELP1Q5T871 98 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 PHLDA3Q9Y5J5 127 aa11.4□□□□□ -0.58
CLK3-210ENST00000563112 RHODO00212 210 aa11.39□□□□□ -0.59
CLK3-210ENST00000563112 LINC01556Q5JQF7 62 aa11.39□□□□□ -0.59
CLK3-210ENST00000563112 DMRTA1Q5VZB9 504 aa11.39□□□□□ -0.59
CLK3-210ENST00000563112 TMUB2Q71RG4 321 aa11.39□□□□□ -0.59
CLK3-210ENST00000563112 TMSB15BA0A087X1C1 80 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 GAGE12JA6NER3 117 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 NKX2-5P52952 324 aaPredicted RBP11.38□□□□□ -0.59
CLK3-210ENST00000563112 GAGE1Q13065 139 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 GAGE4Q13068 117 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 GAGE5Q13069 117 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 LINC01559Q495D7 138 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 GAGE13Q4V321 117 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 CDPF1Q6NVV7 123 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 Q6ZSN1 163 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 JPT2Q9H910 190 aa11.38□□□□□ -0.59
CLK3-210ENST00000563112 A0A087WTM6 91 aa11.37□□□□□ -0.59
CLK3-210ENST00000563112 PSCAO43653 123 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms