RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ZFAND6Q6FIF0 208 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 CEMP1Q6PRD7 247 aaPredicted RBP7.16□□□□□ -1.26
USP3-216ENST00000559873 FAM231DQ6ZW35 169 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 LINC01551Q86U37 167 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 COMMD7Q86VX2 200 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 ZFP82Q8N141 532 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 C15orf54Q8N8G6 183 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 PTH2Q96A98 100 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 FAM210BQ96KR6 192 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 RPP21Q9H633 154 aaKnown RBP7.16□□□□□ -1.26
USP3-216ENST00000559873 A0A1W2PPQ1 181 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 C9JQL5 133 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 K7EN84 100 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 GATCO43716 136 aaKnown RBP7.15□□□□□ -1.26
USP3-216ENST00000559873 CIDEAO60543 219 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 ARMS2P0C7Q2 107 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 PNRC1Q12796 327 aaPredicted RBP7.15□□□□□ -1.26
USP3-216ENST00000559873 CT83Q5H943 113 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 NUDT10Q8NFP7 164 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 NUDT11Q96G61 164 aa7.15□□□□□ -1.26
USP3-216ENST00000559873 TRAV4A0A0B4J268 109 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 LINC00862A6NCI5 91 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 A8MWV9 139 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 F5H768 121 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 OR5AL1P0C617 328 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 RPL23P62829 140 aaKnown RBP7.14□□□□□ -1.27
USP3-216ENST00000559873 CASC10Q5T4H9 136 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 FER1L6-AS1Q8NA97 138 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 OR4C5Q8NGB2 326 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 RNASE7Q9H1E1 156 aaKnown RBP7.14□□□□□ -1.27
USP3-216ENST00000559873 SCRT2Q9NQ03 307 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 OSTCQ9NRP0 149 aa7.14□□□□□ -1.27
USP3-216ENST00000559873 A8MWL6 223 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 F2Z2F3 143 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 M0R381 172 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 RHODO00212 210 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 SNAI2O43623 268 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 CACNG7P62955 275 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 SLAQ13239 276 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 SPANXN1Q5VSR9 72 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 ISOC2Q96AB3 205 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 TPPP3Q9BW30 176 aa7.13□□□□□ -1.27
USP3-216ENST00000559873 IGHV4-4A0A075B6R2 117 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 TRGV4A0A0C4DH28 118 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 IGLL5B9A064 214 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 F8W036 122 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 IGLC6P0CF74 106 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 C15orf53Q8NAA6 179 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 OR10G8Q8NGN5 311 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 BORCS7Q96B45 105 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 SFRP2Q96HF1 295 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 AP1S3Q96PC3 154 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 SSBP4Q9BWG4 385 aaPredicted RBP7.12□□□□□ -1.27
USP3-216ENST00000559873 STARD9Q9P2P6 4700 aa7.12□□□□□ -1.27
USP3-216ENST00000559873 MUC4Q99102 2169 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 TMEM218A2RU14 115 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 FAM231BA6NCW3 169 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 PPP1R2P9O14990 202 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 RS1O15537 224 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 NXPH4O95158 308 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 IGHV3-53P01767 116 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 CTRLP40313 264 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 ZFP2Q6ZN57 461 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 OR10AG1Q8NH19 301 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 TSKUQ8WUA8 353 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 GFRA4Q9GZZ7 299 aa7.11□□□□□ -1.27
USP3-216ENST00000559873 H3BNG1 76 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 TRGC1P0CF51 173 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 SMIM17P0DL12 118 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 GZMBP10144 247 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 CFAP126Q5VTH2 177 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 TMEM88Q6PEY1 159 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 ZNF479Q96JC4 524 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 SEC11CQ9BY50 192 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 PRO0255Q9UI72 69 aa7.1□□□□□ -1.27
USP3-216ENST00000559873 TRAV26-1A0A087WT03 109 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 MT-ND4LP03901 98 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 HOXA5P20719 270 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 NDUFA5Q16718 116 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 FAM74A4Q5TZK3 123 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 DMRTA1Q5VZB9 504 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 WDR73Q6P4I2 378 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 SMIM15Q7Z3B0 74 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 NAT8BQ9UHF3 227 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 HHLA3Q9XRX5 114 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 V9GYV3 84 aa7.09□□□□□ -1.27
USP3-216ENST00000559873 HIGD1CA8MV81 97 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 PAX4O43316 350 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 FHL2Q14192 279 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 RHOHQ15669 191 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 LYZL1Q6UWQ5 148 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 ZNF575Q86XF7 245 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 ANAPC16Q96DE5 110 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 PRADC1Q9BSG0 188 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 CNFNQ9BYD5 112 aa7.08□□□□□ -1.28
USP3-216ENST00000559873 CSMD3Q7Z407 3707 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 MUC21A0A0G2JKD1 596 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 A0A0J9YY99 117 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 MUC21A0A140T8X8 626 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 TRBV6-4A0A1B0GX49 114 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms