RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZNF738Q8NE65 137 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 OR4B1Q8NGF8 309 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 ISOC2Q96AB3 205 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 SFRP2Q96HF1 295 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 C1QTNF4Q9BXJ3 329 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 SAV1Q9H4B6 383 aaPredicted RBP3.8□□□□□ -1.8
LDLR-209ENST00000558528 COL7A1Q02388 2944 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 IGHV3-49A0A0A0MS15 119 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 FAM231BA6NCW3 169 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 FABP5P3A8MUU1 101 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 A8MWL6 223 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 K7EQG2 157 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 GATCO43716 136 aaKnown RBP3.79□□□□□ -1.8
LDLR-209ENST00000558528 HSBP1O75506 76 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 P01737 135 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 AMBPP02760 352 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 S100A6P06703 90 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 COTL1Q14019 142 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 DEFB114Q30KQ6 69 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 IBA57Q5T440 356 aaKnown RBP3.79□□□□□ -1.8
LDLR-209ENST00000558528 C9orf66Q5T8R8 295 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 PRNTQ86SH4 94 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 Q8N1X5 172 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 C3orf56Q8N813 242 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 DCANP1Q8TF63 244 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 IGF2BP2-AS1Q96M15 143 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 ODF3Q96PU9 254 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 MS4A6AQ9H2W1 248 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 ZNF492Q9P255 531 aa3.79□□□□□ -1.8
LDLR-209ENST00000558528 WNK2Q9Y3S1 2297 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 TRAV8-2A0A0B4J237 113 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 TRAV21A0A0B4J279 112 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 ZNF705GA8MUZ8 300 aaPredicted RBP3.78□□□□□ -1.8
LDLR-209ENST00000558528 M0R3E3 92 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 SLC17A3O00476 420 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 SOCS3O14543 225 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 S100A8P05109 93 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 LEPP41159 167 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 NUTF2P61970 127 aaKnown RBP3.78□□□□□ -1.8
LDLR-209ENST00000558528 GNG5P63218 68 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 HIST1H1AQ02539 215 aaPredicted RBP3.78□□□□□ -1.8
LDLR-209ENST00000558528 BTN1A1Q13410 526 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 OR5I1Q13606 314 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 DEFB136Q30KP8 78 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 RNF212Q495C1 297 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 Q6AWC8 147 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 FOXI2Q6ZQN5 318 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 C18orf65Q6ZTR6 163 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 Q86TA4 180 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 OR8A1Q8NGG7 326 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 BORCS7Q96B45 105 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 GFRA4Q9GZZ7 299 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 NOTCH3Q9UM47 2321 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 TNCP24821 2201 aa3.78□□□□□ -1.8
LDLR-209ENST00000558528 TET2Q6N021 2002 aaPredicted RBP3.77□□□□□ -1.81
LDLR-209ENST00000558528 IGKV3-7A0A075B6H7 116 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 TRBV24-1A0A075B6N3 115 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 IGHV3OR16-12A0A075B7B8 117 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 IGHV3-38A0A0C4DH36 116 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 IGLV1-51P01701 117 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 IGLV2-11P01706 119 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 CXCL1P09341 107 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 PSMG4Q5JS54 123 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 FAM162BQ5T6X4 162 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 RASL11AQ6T310 242 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 WFDC9Q8NEX5 89 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 TSKUQ8WUA8 353 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 KCNS1Q96KK3 526 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 LINC00479Q96M42 142 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 DUX3Q96PT4 197 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 DERL1Q9BUN8 251 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 AGPAT4-IT1Q9H0P7 198 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 IL36BQ9NZH7 164 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 DNAH9Q9NYC9 4486 aa3.77□□□□□ -1.81
LDLR-209ENST00000558528 TRBV20OR9-2A0A075B6H5 130 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 IGKV2-40A0A087WW87 121 aaPredicted RBP3.76□□□□□ -1.81
LDLR-209ENST00000558528 A0A0J9YX75 114 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 A0A1B0GW15 77 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 TMEM189A5PLL7 270 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 ZNF705FA8MVS1 300 aaPredicted RBP3.76□□□□□ -1.81
LDLR-209ENST00000558528 OR11H12B2RN74 326 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 F2Z2F3 143 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 K7EN84 100 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 IGKV2D-40P01614 121 aaPredicted RBP3.76□□□□□ -1.81
LDLR-209ENST00000558528 IGLV2-8P01709 118 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 GPX1P07203 203 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 PFN1P07737 140 aaKnown RBP3.76□□□□□ -1.81
LDLR-209ENST00000558528 ZNF688P0C7X2 276 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 CRISP2P16562 243 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 TFPI2P48307 235 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 FOXA3P55318 350 aaPredicted RBP3.76□□□□□ -1.81
LDLR-209ENST00000558528 DEFB131AP59861 70 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 ATP5L2Q7Z4Y8 100 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 GTSCR1Q86UQ5 136 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 ZNF575Q86XF7 245 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 TMEM61Q8N0U2 210 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 RNF182Q8N6D2 247 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 C20orf144Q9BQM9 153 aa3.76□□□□□ -1.81
LDLR-209ENST00000558528 RPP21Q9H633 154 aaKnown RBP3.76□□□□□ -1.81
LDLR-209ENST00000558528 NAT8BQ9UHF3 227 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms