RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 Q6ZVH6 145 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 SVIPQ8NHG7 77 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 U3KQK5 164 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 J3QKU1 62 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 ZNF747Q9BV97 191 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 MAP1LC3CQ9BXW4 147 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 LAMTOR2Q9Y2Q5 125 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 KNCNA6PVL3 124 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 MGPP08493 103 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 PPP1R14DQ9NXH3 145 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 TRAV21A0A0B4J279 112 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 DNAJC9-AS1A6NH13 148 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 HINT1P49773 126 aaPredicted RBP8.29□□□□□ -1.08
CUX1-212ENST00000547394 NEGR1Q7Z3B1 354 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 LRRC75A-AS1Q8N1F1 130 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 CNFNQ9BYD5 112 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 YAE1D1Q9NRH1 226 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 PHLDA3Q9Y5J5 127 aa8.29□□□□□ -1.08
CUX1-212ENST00000547394 KLHL30-AS1Q8NEE0 82 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 RPL39LQ96EH5 51 aaKnown RBP8.28□□□□□ -1.08
CUX1-212ENST00000547394 TRAV9-2A0A087WT02 112 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 LEPP41159 167 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 Q6ZSV7 163 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 TENM1Q9UKZ4 2725 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 A0A087WWL8 130 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 K7EMT4 169 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 ELANEP08246 267 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 CACNG7P62955 275 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 ANKRD39Q53RE8 183 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 UBE2E2Q96LR5 201 aa8.28□□□□□ -1.08
CUX1-212ENST00000547394 CD7P09564 240 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 RNASE3P12724 160 aaKnown RBP8.27□□□□□ -1.09
CUX1-212ENST00000547394 ID1P41134 155 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 ASIPP42127 132 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 DLX4Q92988 240 aaPredicted RBP8.27□□□□□ -1.09
CUX1-212ENST00000547394 MAP1LC3AQ9H492 121 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 HSPB8Q9UJY1 196 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 NBEAL2Q6ZNJ1 2754 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 OR2K2Q8NGT1 345 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 MDFICQ9P1T7 246 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 ZNF580Q9UK33 172 aa8.27□□□□□ -1.09
CUX1-212ENST00000547394 TSPOP30536 169 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 DPF1Q92782 380 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 FAM19A4Q96LR4 140 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 KRTAP1-1Q07627 177 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 FAM74A4Q5TZK3 123 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 APRG1Q8IVJ8 170 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 TMEM61Q8N0U2 210 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 MYOZ3Q8TDC0 251 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 DKK2Q9UBU2 259 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 HIVEP1P15822 2718 aa8.26□□□□□ -1.09
CUX1-212ENST00000547394 K7EQG2 157 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 DEFB131AP59861 70 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 SNRPD3P62318 126 aaKnown RBP8.25□□□□□ -1.09
CUX1-212ENST00000547394 FAM159AQ6UWV7 190 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 SMIM15Q7Z3B0 74 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 NRACQ8N912 160 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 TMEM158Q8WZ71 300 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 NACAE9PAV3 2078 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 A0A0J9YX75 114 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 C20orf202A1L168 122 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 HBDP02042 147 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 CBY1Q9Y3M2 126 aa8.25□□□□□ -1.09
CUX1-212ENST00000547394 CRXO43186 299 aaPredicted RBP8.24□□□□□ -1.09
CUX1-212ENST00000547394 CD28P10747 220 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 PTTG1IPP53801 180 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 OR1N2Q8NGR9 330 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 ATRQ13535 2644 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 CCL25O15444 150 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 KLLNB2CW77 178 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 ERASQ7Z444 233 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 IFI27L1Q96BM0 104 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 LENEPQ9Y5L5 61 aa8.24□□□□□ -1.09
CUX1-212ENST00000547394 NSD1Q96L73 2696 aaPredicted RBP8.23□□□□□ -1.09
CUX1-212ENST00000547394 LINC01619G3V211 115 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 RBMY1A1P0DJD3 496 aaKnown RBP8.23□□□□□ -1.09
CUX1-212ENST00000547394 RBMY1CP0DJD4 496 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 PCP4P48539 62 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 RBMY1FQ15415 496 aaKnown RBP8.23□□□□□ -1.09
CUX1-212ENST00000547394 C7orf71A4D174 169 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 F5H697 171 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 LINC01545Q5VT33 79 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 PET117Q6UWS5 81 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 Q8N1Y9 231 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 RASL10AQ92737 203 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 TTTY13Q9BZ97 58 aa8.23□□□□□ -1.09
CUX1-212ENST00000547394 CD5LO43866 347 aa8.22□□□□□ -1.09
CUX1-212ENST00000547394 OR9G4Q8NGQ1 327 aa8.22□□□□□ -1.09
CUX1-212ENST00000547394 IGHV3-73A0A0B4J1V6 119 aa8.22□□□□□ -1.09
CUX1-212ENST00000547394 TMEM89A2RUT3 159 aa8.22□□□□□ -1.09
CUX1-212ENST00000547394 PRSS1P07477 247 aa8.22□□□□□ -1.09
CUX1-212ENST00000547394 CD300EQ496F6 205 aaPredicted RBP8.22□□□□□ -1.09
CUX1-212ENST00000547394 RNASE8Q8TDE3 154 aaKnown RBP8.22□□□□□ -1.09
CUX1-212ENST00000547394 CITED2Q99967 270 aaPredicted RBP8.22□□□□□ -1.09
CUX1-212ENST00000547394 TEP1Q99973 2627 aaKnown RBP8.22□□□□□ -1.09
CUX1-212ENST00000547394 MRPS16Q9Y3D3 137 aaKnown RBP8.22□□□□□ -1.09
CUX1-212ENST00000547394 IGLV2-18A0A075B6J9 118 aa8.21□□□□□ -1.09
CUX1-212ENST00000547394 HSBP1L1C9JCN9 74 aa8.21□□□□□ -1.09
CUX1-212ENST00000547394 PPBPP02775 128 aa8.21□□□□□ -1.09
CUX1-212ENST00000547394 DYNLRB2Q8TF09 96 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms