RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TECTAO75443 2155 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 WIPF3A6NGB9 483 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 AKAP6Q13023 2319 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 E9PLD3 99 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE5Q13069 117 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE6Q13070 117 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV1-58A0A0C4DH39 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 F6UB75 175 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 SMKR1H3BMG3 65 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 OVOL3O00110 214 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 WT1-ASQ06250 92 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 C1orf229Q6ZS94 237 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GTSF1LQ9H1H1 148 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 SPANXB1Q9NS25 103 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-211ENST00000543710 IGKV3D-20A0A0C4DH25 116 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 J3KT08 172 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 C1orf159Q96HA4 380 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 CACNA1CQ13936 2221 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV3-64A0A075B6Q5 118 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE12JA6NER3 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE7O76087 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE12FP0CL80 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE12GP0CL81 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE12IP0CL82 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE4Q13068 117 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 PRR4Q16378 134 aa6.09□□□□□ -1.43
VPS13D-211ENST00000543710 TDRD6O60522 2096 aaKnown RBP6.09□□□□□ -1.43
VPS13D-211ENST00000543710 A0A087WWL8 130 aa6.09□□□□□ -1.44
VPS13D-211ENST00000543710 TRBV10-2A0A0K0K1G8 114 aa6.09□□□□□ -1.44
VPS13D-211ENST00000543710 A4D1N5 150 aa6.09□□□□□ -1.44
VPS13D-211ENST00000543710 C11orf53Q8IXP5 236 aa6.09□□□□□ -1.44
VPS13D-211ENST00000543710 CYYR1Q96J86 154 aa6.09□□□□□ -1.44
VPS13D-211ENST00000543710 TRAV10A0A0B4J240 114 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 IGLV2-23P01705 113 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 TFF1P04155 84 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 CD24P25063 80 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 GPHB5Q86YW7 130 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 MRPL35Q9NZE8 188 aaKnown RBP6.08□□□□□ -1.44
VPS13D-211ENST00000543710 NDPQ00604 133 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 TET1Q8NFU7 2136 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 J3QL48 77 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 WWC2-AS2Q96NR7 200 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 FANCD2OSQ96PS1 177 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 NDUFA7O95182 113 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 COX7B2Q8TF08 81 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 ANAPC1Q9H1A4 1944 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 TINCRA0A1B0GVN0 87 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 LGALS9O00182 355 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 BUB3O43684 328 aa6.08□□□□□ -1.44
VPS13D-211ENST00000543710 IGHG2P01859 326 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 SUMO4Q6EEV6 95 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 CCDC88CQ9P219 2028 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 TRAV26-1A0A087WT03 109 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 FUSP35637 526 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS13D-211ENST00000543710 SS18L2Q9UHA2 77 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 ASCC3Q8N3C0 2202 aaKnown RBP6.07□□□□□ -1.44
VPS13D-211ENST00000543710 IGKV2D-24A0A075B6R9 120 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 TRAV13-1A0A0B4J241 112 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 RSPO1Q2MKA7 263 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-211ENST00000543710 DOCK6Q96HP0 2047 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 TRAV4A0A0B4J268 109 aa6.07□□□□□ -1.44
VPS13D-211ENST00000543710 MUC22E2RYF6 1773 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-211ENST00000543710 PRSS29PA6NIE9 313 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 TMEM131Q92545 1883 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 CHD8Q9HCK8 2581 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 TRBV10-1A0A0K0K1A3 114 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 BAALC-AS2P0C853 105 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 TEN1Q86WV5 123 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 VSIG2Q96IQ7 327 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 SEC16AO15027 2179 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 TMEM256-PLSCR3K7ERE1 68 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 BAALCQ8WXS3 180 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 KMT2EQ8IZD2 1858 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 TIMM17BO60830 172 aa6.06□□□□□ -1.44
VPS13D-211ENST00000543710 IGHV3-73A0A0B4J1V6 119 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 hADV29S1A0JD25 119 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 C19orf71A6NCJ1 209 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 ZNRF2Q8NHG8 242 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 CENPVL3A0A0U1RRI6 287 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 G3V4G9 280 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 P0C879 139 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 XCL2Q9UBD3 114 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 NINQ8N4C6 2090 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 ATRXP46100 2492 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 UBE2D1P51668 147 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 EGR2P11161 476 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-211ENST00000543710 Q8N1Y9 231 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 AJUBAQ96IF1 538 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 NPC2P61916 151 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 DYNAPQ8N1N2 210 aa6.05□□□□□ -1.44
VPS13D-211ENST00000543710 SMIM9A6NGZ8 99 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 C5orf56Q8N8D9 126 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 ZNF581Q9P0T4 197 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 KNCNA6PVL3 124 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 K7EIM0 57 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 TNFRSF13BO14836 293 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-211ENST00000543710 PIK3CD-AS1Q5SR53 167 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 KIR2DL5BQ8NHK3 375 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 C19orf84I3L1E1 186 aa6.04□□□□□ -1.44
VPS13D-211ENST00000543710 C5orf24Q7Z6I8 188 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms