RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 UBE2G1P62253 170 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 ZNF506Q5JVG8 444 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 CFAP126Q5VTH2 177 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 TCTE3Q8IZS6 198 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 PCNPQ8WW12 178 aaKnown RBP10.13□□□□□ -0.79
USP28-204ENST00000537642 SH2D1AO60880 128 aa10.12□□□□□ -0.79
USP28-204ENST00000537642 LTAP01374 205 aa10.12□□□□□ -0.79
USP28-204ENST00000537642 H2AFB1P0C5Y9 115 aa10.12□□□□□ -0.79
USP28-204ENST00000537642 AKR1C3P42330 323 aa10.12□□□□□ -0.79
USP28-204ENST00000537642 LGALSLQ3ZCW2 172 aaPredicted RBP10.12□□□□□ -0.79
USP28-204ENST00000537642 Q6ZNX1 250 aa10.12□□□□□ -0.79
USP28-204ENST00000537642 LRP1BQ9NZR2 4599 aa10.11□□□□□ -0.79
USP28-204ENST00000537642 B4DEV8 164 aa10.11□□□□□ -0.79
USP28-204ENST00000537642 KRBOX1C9JBD0 128 aa10.11□□□□□ -0.79
USP28-204ENST00000537642 S100A4P26447 101 aaKnown RBP10.11□□□□□ -0.79
USP28-204ENST00000537642 ASIPP42127 132 aa10.11□□□□□ -0.79
USP28-204ENST00000537642 IGHV3-73A0A0B4J1V6 119 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 SCO2A0A1W2PP80 73 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 M0R036 132 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 CIDEAO60543 219 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 ZNF674Q2M3X9 581 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 FAM162BQ5T6X4 162 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 ZNF575Q86XF7 245 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 SLC25A29Q8N8R3 303 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 TXNDC17Q9BRA2 123 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 IL36BQ9NZH7 164 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 DNAH5Q8TE73 4624 aa10.1□□□□□ -0.79
USP28-204ENST00000537642 H3BVH4 76 aa10.09□□□□□ -0.79
USP28-204ENST00000537642 BTF3P20290 206 aaKnown RBP10.09□□□□□ -0.79
USP28-204ENST00000537642 CCL20P78556 96 aa10.09□□□□□ -0.79
USP28-204ENST00000537642 DNLZQ5SXM8 178 aa10.09□□□□□ -0.79
USP28-204ENST00000537642 NHLRC2Q8NBF2 726 aa10.09□□□□□ -0.79
USP28-204ENST00000537642 TRBV6-4A0A1B0GX49 114 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 GRIFINA4D1Z8 144 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 C1QBP02746 253 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 LINC00315P59091 139 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 LINC01559Q495D7 138 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 PIK3CD-AS1Q5SR53 167 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 WFDC10BQ8IUB3 73 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 PARLQ9H300 379 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 RYR1P21817 5038 aa10.08□□□□□ -0.8
USP28-204ENST00000537642 TMSB15BA0A087X1C1 80 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 TRAV1-1A0A0B4J248 108 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 S100A9P06702 114 aaKnown RBP10.07□□□□□ -0.8
USP28-204ENST00000537642 ARMS2P0C7Q2 107 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 RAB5CP51148 216 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 RHOHQ15669 191 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 DMRTA1Q5VZB9 504 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 Q6ZSN1 163 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 SH2D6Q7Z4S9 175 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 PRADC1Q9BSG0 188 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 JPT2Q9H910 190 aa10.07□□□□□ -0.8
USP28-204ENST00000537642 A8MWV9 139 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 MGST1P10620 155 aaKnown RBP10.06□□□□□ -0.8
USP28-204ENST00000537642 SULT1A2P50226 295 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 TIRAPP58753 221 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 EIF5AL1Q6IS14 154 aaKnown RBP10.06□□□□□ -0.8
USP28-204ENST00000537642 ZFP2Q6ZN57 461 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 Q6ZRN7 208 aaPredicted RBP10.06□□□□□ -0.8
USP28-204ENST00000537642 MLST8Q9BVC4 326 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 SAMD10Q9BYL1 202 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 SCRT2Q9NQ03 307 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 GNG13Q9P2W3 67 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 LY96Q9Y6Y9 160 aa10.06□□□□□ -0.8
USP28-204ENST00000537642 MED14OSP0DP75 135 aa10.05□□□□□ -0.8
USP28-204ENST00000537642 UFSP1Q6NVU6 142 aa10.05□□□□□ -0.8
USP28-204ENST00000537642 SLC51BQ86UW2 128 aa10.05□□□□□ -0.8
USP28-204ENST00000537642 BAGE2Q86Y30 109 aa10.05□□□□□ -0.8
USP28-204ENST00000537642 MANBALQ9NQG1 85 aa10.05□□□□□ -0.8
USP28-204ENST00000537642 TNFRSF18Q9Y5U5 241 aa10.05□□□□□ -0.8
USP28-204ENST00000537642 hCG_2014768A0A024R1R8 64 aa10.04□□□□□ -0.8
USP28-204ENST00000537642 DNAH10OSP0CZ25 163 aa10.04□□□□□ -0.8
USP28-204ENST00000537642 SYT8Q8NBV8 401 aa10.04□□□□□ -0.8
USP28-204ENST00000537642 C11orf52Q96A22 123 aa10.04□□□□□ -0.8
USP28-204ENST00000537642 HSPG2P98160 4391 aa10.03□□□□□ -0.8
USP28-204ENST00000537642 TRAV9-2A0A087WT02 112 aa10.03□□□□□ -0.8
USP28-204ENST00000537642 RPL35P42766 123 aaKnown RBP10.03□□□□□ -0.8
USP28-204ENST00000537642 RPL19P84098 196 aaKnown RBP10.03□□□□□ -0.8
USP28-204ENST00000537642 AKAP14Q86UN6 197 aa10.03□□□□□ -0.8
USP28-204ENST00000537642 DERL1Q9BUN8 251 aa10.03□□□□□ -0.8
USP28-204ENST00000537642 PHLDA3Q9Y5J5 127 aa10.03□□□□□ -0.8
USP28-204ENST00000537642 C16orf90A8MZG2 172 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 TEX46H3BTG2 121 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 M0R381 172 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 LINC00694P0DN24 101 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 EVI2AP22794 236 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 C9orf62Q8N4C0 152 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 C14orf178Q8N769 122 aaPredicted RBP10.02□□□□□ -0.81
USP28-204ENST00000537642 SFRP2Q96HF1 295 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 Q9UF83 564 aa10.02□□□□□ -0.81
USP28-204ENST00000537642 APOBP04114 4563 aaKnown RBP10.02□□□□□ -0.81
USP28-204ENST00000537642 K7EP13 123 aa10.01□□□□□ -0.81
USP28-204ENST00000537642 RHODO00212 210 aa10.01□□□□□ -0.81
USP28-204ENST00000537642 SPATA12Q7Z6I5 190 aa10.01□□□□□ -0.81
USP28-204ENST00000537642 ZFP82Q8N141 532 aa10.01□□□□□ -0.81
USP28-204ENST00000537642 ATP6V0E2Q8NHE4 81 aa10.01□□□□□ -0.81
USP28-204ENST00000537642 GTSF1LQ9H1H1 148 aa10.01□□□□□ -0.81
USP28-204ENST00000537642 A0A087WWL8 130 aa10□□□□□ -0.81
USP28-204ENST00000537642 IGHV3-38A0A0C4DH36 116 aa10□□□□□ -0.81
USP28-204ENST00000537642 GAGE12JA6NER3 117 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms