RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 HIST1H2BDP58876 126 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 HIST1H2BCP62807 126 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 HIST2H2BEQ16778 126 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.34■□□□□ 0.05
VPS28-208ENST00000527797 ZNF493Q6ZR52 646 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 C1orf158Q8N1D5 194 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 HIST1H2BHQ93079 126 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 HIST1H2BNQ99877 126 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 HIST1H2BMQ99879 126 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 MSRB1Q9NZV6 116 aa15.34■□□□□ 0.05
VPS28-208ENST00000527797 SLAQ13239 276 aa15.33■□□□□ 0.04
VPS28-208ENST00000527797 CSTL1Q9H114 145 aa15.33■□□□□ 0.04
VPS28-208ENST00000527797 MDFICQ9P1T7 246 aa15.33■□□□□ 0.04
VPS28-208ENST00000527797 EGFEM1PQ0D2K5 195 aa15.32■□□□□ 0.04
VPS28-208ENST00000527797 C9orf85Q96MD7 179 aa15.32■□□□□ 0.04
VPS28-208ENST00000527797 KIAA1644Q3SXP7 199 aa15.32■□□□□ 0.04
VPS28-208ENST00000527797 GOLT1BQ9Y3E0 138 aa15.32■□□□□ 0.04
VPS28-208ENST00000527797 IGHV3OR16-12A0A075B7B8 117 aa15.31■□□□□ 0.04
VPS28-208ENST00000527797 LOC102724200A0A096LPH7 203 aaPredicted RBP15.31■□□□□ 0.04
VPS28-208ENST00000527797 M0R381 172 aa15.31■□□□□ 0.04
VPS28-208ENST00000527797 SPRY2O43597 315 aa15.31■□□□□ 0.04
VPS28-208ENST00000527797 TMEM191AQ9H0A3 160 aa15.31■□□□□ 0.04
VPS28-208ENST00000527797 NOTCH3Q9UM47 2321 aa15.3■□□□□ 0.04
VPS28-208ENST00000527797 KRTAP10-11P60412 298 aa15.3■□□□□ 0.04
VPS28-208ENST00000527797 SMIM15Q7Z3B0 74 aa15.3■□□□□ 0.04
VPS28-208ENST00000527797 STAB1Q9NY15 2570 aa15.3■□□□□ 0.04
VPS28-208ENST00000527797 S100A6P06703 90 aa15.29■□□□□ 0.04
VPS28-208ENST00000527797 COL6A5A8TX70 2615 aa15.29■□□□□ 0.04
VPS28-208ENST00000527797 PRM2P04554 102 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 ZNF415Q09FC8 603 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 FAM104BQ5XKR9 115 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 CSNK1G2-AS1Q8NCQ2 148 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 NXPH4O95158 308 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 NDUFA6P56556 154 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 DMRTA1Q5VZB9 504 aa15.28■□□□□ 0.04
VPS28-208ENST00000527797 AMN1Q8IY45 258 aa15.27■□□□□ 0.03
VPS28-208ENST00000527797 SYT8Q8NBV8 401 aa15.27■□□□□ 0.03
VPS28-208ENST00000527797 KIR2DL5BA0A0G2JN68 375 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 KIR2DL5BA0A0G2JPC4 375 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 G3V4G9 280 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 EVI2AP22794 236 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 SRIP30626 198 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 APOC4P55056 127 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 KIR2DL5AQ8N109 375 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 KIR2DL5BQ8NHK3 375 aa15.26■□□□□ 0.03
VPS28-208ENST00000527797 IGHV4-30-4P0DP06 118 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 GSN-AS1Q9NRJ2 163 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 AZU1P20160 251 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 SAMD5Q5TGI4 173 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 ZNF705AQ6ZN79 300 aaPredicted RBP15.25■□□□□ 0.03
VPS28-208ENST00000527797 C11orf72Q8NBR9 251 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 AP1S3Q96PC3 154 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 RCHY1Q96PM5 261 aa15.25■□□□□ 0.03
VPS28-208ENST00000527797 ALKBH7Q9BT30 221 aaPredicted RBP15.25■□□□□ 0.03
VPS28-208ENST00000527797 SPXQ9BT56 116 aa15.24■□□□□ 0.03
VPS28-208ENST00000527797 RAB4AP20338 218 aa15.23■□□□□ 0.03
VPS28-208ENST00000527797 MRPL51Q4U2R6 128 aaKnown RBP15.23■□□□□ 0.03
VPS28-208ENST00000527797 RNF185Q96GF1 192 aa15.23■□□□□ 0.03
VPS28-208ENST00000527797 M0R2P5 195 aa15.22■□□□□ 0.03
VPS28-208ENST00000527797 SNRPEP62304 92 aaKnown RBP15.22■□□□□ 0.03
VPS28-208ENST00000527797 ZNF876PQ49A33 203 aa15.22■□□□□ 0.03
VPS28-208ENST00000527797 C14orf178Q8N769 122 aaPredicted RBP15.22■□□□□ 0.03
VPS28-208ENST00000527797 TMEM263Q8WUH6 116 aaKnown RBP15.22■□□□□ 0.03
VPS28-208ENST00000527797 DPH3P1Q9H4G8 78 aa15.22■□□□□ 0.03
VPS28-208ENST00000527797 RNASE8Q8TDE3 154 aaKnown RBP15.21■□□□□ 0.03
VPS28-208ENST00000527797 PTH2Q96A98 100 aa15.21■□□□□ 0.03
VPS28-208ENST00000527797 SMIM17P0DL12 118 aa15.21■□□□□ 0.02
VPS28-208ENST00000527797 RIPPLY3P57055 190 aa15.21■□□□□ 0.02
VPS28-208ENST00000527797 Q0VG73 95 aa15.21■□□□□ 0.02
VPS28-208ENST00000527797 RRN3P1Q2M238 152 aa15.21■□□□□ 0.02
VPS28-208ENST00000527797 OR10J3Q5JRS4 329 aa15.21■□□□□ 0.02
VPS28-208ENST00000527797 C5orf52A6NGY3 159 aa15.2■□□□□ 0.02
VPS28-208ENST00000527797 D6R8Y8 96 aa15.2■□□□□ 0.02
VPS28-208ENST00000527797 ORMDL3Q8N138 153 aa15.2■□□□□ 0.02
VPS28-208ENST00000527797 C16orf74Q96GX8 76 aa15.2■□□□□ 0.02
VPS28-208ENST00000527797 U3KQK5 164 aa15.2■□□□□ 0.02
VPS28-208ENST00000527797 UBE2CO00762 179 aa15.19■□□□□ 0.02
VPS28-208ENST00000527797 PPBPP02775 128 aa15.19■□□□□ 0.02
VPS28-208ENST00000527797 CKS2P33552 79 aa15.19■□□□□ 0.02
VPS28-208ENST00000527797 COA6Q5JTJ3 125 aaKnown RBP15.19■□□□□ 0.02
VPS28-208ENST00000527797 PIK3CD-AS1Q5SR53 167 aa15.19■□□□□ 0.02
VPS28-208ENST00000527797 JPT2Q9H910 190 aa15.19■□□□□ 0.02
VPS28-208ENST00000527797 A8MZ25 164 aa15.18■□□□□ 0.02
VPS28-208ENST00000527797 BAGE3Q86Y29 109 aa15.18■□□□□ 0.02
VPS28-208ENST00000527797 C18orf32Q8TCD1 76 aa15.18■□□□□ 0.02
VPS28-208ENST00000527797 TRRAPQ9Y4A5 3859 aa15.18■□□□□ 0.02
VPS28-208ENST00000527797 IL17DQ8TAD2 202 aa15.17■□□□□ 0.02
VPS28-208ENST00000527797 PRELID3AQ96N28 172 aa15.17■□□□□ 0.02
VPS28-208ENST00000527797 MGPP08493 103 aa15.17■□□□□ 0.02
VPS28-208ENST00000527797 HOXA5P20719 270 aa15.17■□□□□ 0.02
VPS28-208ENST00000527797 KIF25-AS1Q9Y6Z4 181 aa15.17■□□□□ 0.02
VPS28-208ENST00000527797 A0A087WWL8 130 aa15.16■□□□□ 0.02
VPS28-208ENST00000527797 SMIM9A6NGZ8 99 aa15.16■□□□□ 0.02
VPS28-208ENST00000527797 SMKR1H3BMG3 65 aa15.16■□□□□ 0.02
VPS28-208ENST00000527797 IQCJQ1A5X6 159 aa15.16■□□□□ 0.02
VPS28-208ENST00000527797 MRAP2Q96G30 205 aa15.16■□□□□ 0.02
VPS28-208ENST00000527797 MUC4Q99102 2169 aa15.16■□□□□ 0.02
VPS28-208ENST00000527797 NCR2O95944 276 aa15.15■□□□□ 0.02
VPS28-208ENST00000527797 DEFB135Q30KP9 77 aa15.15■□□□□ 0.02
VPS28-208ENST00000527797 NDUFAF3Q9BU61 184 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms