RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C18orf32Q8TCD1 76 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 TMEM230Q96A57 120 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 CDIP1Q9H305 208 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 IGHV4OR15-8A0A075B7B6 117 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 A0A087WW49 117 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 FOXE3Q13461 319 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 PMVKQ15126 192 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 ZNF56Q15929 161 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 C4orf48Q5BLP8 95 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 ZNF833PQ6ZTB9 187 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 PGLYRP1O75594 196 aaPredicted RBP6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 OPRK1P41145 380 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 MLANAQ16655 118 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 C15orf32Q32M92 178 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 TMEM78Q5T7P6 136 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 SYS1-DBNDD2H3BUS1 97 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 ZC2HC1BQ5TFG8 222 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 C2orf48Q96LS8 159 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 HIST1H4GQ99525 98 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 TMEM147Q9BVK8 224 aa6.08□□□□□ -1.44
LIMCH1-219ENST00000514096 IGHG2P01859 326 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 ASPHD1Q5U4P2 390 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 LINC00482Q8N8I6 264 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 FOXA2Q9Y261 457 aaPredicted RBP6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 ZNF688P0C7X2 276 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 HBG1P69891 147 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 EXOC3-AS1Q8N2X6 119 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 OR10J6PQ8NGY7 276 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 PPDPFLQ8WWR9 84 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 EPDR1Q9UM22 224 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 NACAE9PAV3 2078 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 NDUFA7O95182 113 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 P01737 135 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 ATP5G3P48201 142 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 FXYD2P54710 66 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 SUPT4H1P63272 117 aaKnown RBP6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 PDPNQ86YL7 162 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 TTTY13Q9BZ97 58 aa6.07□□□□□ -1.44
LIMCH1-219ENST00000514096 TENM3Q9P273 2699 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 TRAV2A0A0B4J234 112 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 A8MWV9 139 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 IL4P05112 153 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 KIR2DS2P43631 304 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 TAL2Q16559 108 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 LINC00311Q8N616 119 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 DYNLRB2Q8TF09 96 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 TMEM50AO95807 157 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 FXYD7P58549 80 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 Q0VG73 95 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 WFDC10AQ9H1F0 79 aa6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 YTHDF2Q9Y5A9 579 aaKnown RBP6.06□□□□□ -1.44
LIMCH1-219ENST00000514096 HSPE1P61604 102 aaKnown RBP6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 CD69Q07108 199 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 CT83Q5H943 113 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 FOXI2Q6ZQN5 318 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 TRPT1Q86TN4 253 aaKnown RBP6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 OCC1Q8TAD7 63 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 JPT2Q9H910 190 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 CACNG5Q9UF02 275 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 U3KQE9 123 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 LOC389332A0A1B0GUA5 103 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 WI2-2373I1.2A0A1W2PRP0 233 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 CD7P09564 240 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 CARD19Q96LW7 228 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 A8MWL6 223 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 PRSS3P2Q8NHM4 247 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 IL36BQ9NZH7 164 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 AGRNO00468 2067 aa6.05□□□□□ -1.44
LIMCH1-219ENST00000514096 TRAV8-4A0A0B4J246 113 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 C3orf85A0A1B0GTC6 90 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 hADV29S1A0JD25 119 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 FAM90A9PA6NNJ1 464 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 TRACP01848 142 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 COX8AP10176 69 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 BRWD1-AS2P59051 145 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 Q1RN00 199 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 PCP2Q8IVA1 136 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 NXT2Q9NPJ8 142 aaKnown RBP6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 OVOL1O14753 267 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 IGLV2-14P01704 120 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 HLA-DQA1P01909 254 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 PRO0628Q9UI54 55 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 PITX3O75364 302 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 NDUFA11Q86Y39 141 aa6.04□□□□□ -1.44
LIMCH1-219ENST00000514096 A0A0G2JRQ6 117 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 H7C1H1 209 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 YPEL3P61236 119 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 SCRT2Q9NQ03 307 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 TENM2Q9NT68 2774 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 IGKV3-20P01619 116 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 IGLV2-23P01705 113 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 APOHP02749 345 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 HBG2P69892 147 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 C16orf95Q9H693 158 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 RBAKDNA6NC62 111 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 KRTAP21-3Q3LHN1 58 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 LINC00336Q6ZUF6 198 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 LINC00574Q9H8X3 128 aa6.03□□□□□ -1.44
LIMCH1-219ENST00000514096 IZUMO1RA6ND01 250 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 ADARB2-AS1A8MUL3 147 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms