RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 IL36BQ9NZH7 164 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 CRXO43186 299 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 P0DMU3 169 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 FAM231AP0DMU4 169 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 FAM231CP0DMU5 169 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 TMEM88Q6PEY1 159 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 KCNIP4Q6PIL6 250 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 TSKUQ8WUA8 353 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 GFRA4Q9GZZ7 299 aa12.82□□□□□ -0.36
SQSTM1-209ENST00000504627 DNAH6Q9C0G6 4158 aa12.81□□□□□ -0.36
SQSTM1-209ENST00000504627 TRAV12-2A0A075B6T6 113 aa12.81□□□□□ -0.36
SQSTM1-209ENST00000504627 FAM231BA6NCW3 169 aa12.81□□□□□ -0.36
SQSTM1-209ENST00000504627 HTN3P15516 51 aa12.81□□□□□ -0.36
SQSTM1-209ENST00000504627 S100PP25815 95 aa12.81□□□□□ -0.36
SQSTM1-209ENST00000504627 RPL19P84098 196 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-209ENST00000504627 TRAV9-1A0A075B6T8 112 aa12.8□□□□□ -0.36
SQSTM1-209ENST00000504627 TRAV12-3A0A0B4J271 114 aa12.8□□□□□ -0.36
SQSTM1-209ENST00000504627 SMIM27A0A1W2PRY6 76 aa12.8□□□□□ -0.36
SQSTM1-209ENST00000504627 ZNF324O75467 553 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-209ENST00000504627 ORM1P02763 201 aa12.8□□□□□ -0.36
SQSTM1-209ENST00000504627 C11orf21Q9P2W6 132 aa12.8□□□□□ -0.36
SQSTM1-209ENST00000504627 IGKV3D-20A0A0C4DH25 116 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 DAD1P61803 113 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 TDRG1Q3Y452 100 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 POM121L12Q8N7R1 296 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 KCNS1Q96KK3 526 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 FAM210BQ96KR6 192 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 NAGKQ9UJ70 344 aa12.79□□□□□ -0.36
SQSTM1-209ENST00000504627 TMEM256Q8N2U0 113 aa12.78□□□□□ -0.36
SQSTM1-209ENST00000504627 BTF3L4Q96K17 158 aa12.78□□□□□ -0.36
SQSTM1-209ENST00000504627 NAT8BQ9UHF3 227 aa12.78□□□□□ -0.36
SQSTM1-209ENST00000504627 ANXA2RQ3ZCQ2 193 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 FAM159AQ6UWV7 190 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 Q6ZQT7 251 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 UBE2DNLQ8IWF7 75 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 YPEL4Q96NS1 127 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 PYGO2Q9BRQ0 406 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 LINC00467Q9BRT7 94 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 URGCP-MRPS24S4R325 110 aa12.77□□□□□ -0.37
SQSTM1-209ENST00000504627 IGHV1OR15-1A0A075B7D0 117 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 TMSB15BA0A087X1C1 80 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 A0A1W2PPQ1 181 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 HIGD1CA8MV81 97 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 PRM2P04554 102 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 CTRLP40313 264 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 TCL1AP56279 114 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 ELOBQ15370 118 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 MUC21Q5SSG8 566 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 DNLZQ5SXM8 178 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 GTSF1Q8WW33 167 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 LINC01587Q99440 93 aa12.76□□□□□ -0.37
SQSTM1-209ENST00000504627 TRBV24-1A0A075B6N3 115 aa12.75□□□□□ -0.37
SQSTM1-209ENST00000504627 IGLC6P0CF74 106 aa12.75□□□□□ -0.37
SQSTM1-209ENST00000504627 MED14OSP0DP75 135 aa12.75□□□□□ -0.37
SQSTM1-209ENST00000504627 GZMBP10144 247 aa12.75□□□□□ -0.37
SQSTM1-209ENST00000504627 HTN1P15515 57 aa12.75□□□□□ -0.37
SQSTM1-209ENST00000504627 FOXA3P55318 350 aaPredicted RBP12.75□□□□□ -0.37
SQSTM1-209ENST00000504627 TRGV11A0A075B6L2 103 aa12.74□□□□□ -0.37
SQSTM1-209ENST00000504627 LYRM9A8MSI8 78 aa12.74□□□□□ -0.37
SQSTM1-209ENST00000504627 TYMSP04818 313 aa12.74□□□□□ -0.37
SQSTM1-209ENST00000504627 ASIPP42127 132 aa12.74□□□□□ -0.37
SQSTM1-209ENST00000504627 FER1L6-AS1Q8NA97 138 aa12.74□□□□□ -0.37
SQSTM1-209ENST00000504627 NUP35Q8NFH5 326 aa12.74□□□□□ -0.37
SQSTM1-209ENST00000504627 DEFB130BP0DP73 79 aa12.73□□□□□ -0.37
SQSTM1-209ENST00000504627 DEFB130AP0DP74 79 aa12.73□□□□□ -0.37
SQSTM1-209ENST00000504627 FAM3BP58499 235 aaPredicted RBP12.73□□□□□ -0.37
SQSTM1-209ENST00000504627 ATP5L2Q7Z4Y8 100 aa12.73□□□□□ -0.37
SQSTM1-209ENST00000504627 ZNF575Q86XF7 245 aa12.73□□□□□ -0.37
SQSTM1-209ENST00000504627 GRIFINA4D1Z8 144 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 M0R2N4 97 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 SNAI2O43623 268 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 OR5AL1P0C617 328 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 AZU1P20160 251 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 BORCS7Q96B45 105 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 CNFNQ9BYD5 112 aa12.72□□□□□ -0.37
SQSTM1-209ENST00000504627 F2Z2F3 143 aa12.71□□□□□ -0.37
SQSTM1-209ENST00000504627 H3BVH4 76 aa12.71□□□□□ -0.37
SQSTM1-209ENST00000504627 S100A4P26447 101 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-209ENST00000504627 LINC00336Q6ZUF6 198 aa12.71□□□□□ -0.37
SQSTM1-209ENST00000504627 PGLYRP4Q96LB8 373 aa12.71□□□□□ -0.37
SQSTM1-209ENST00000504627 SSBP4Q9BWG4 385 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-209ENST00000504627 HECTD4Q9Y4D8 3996 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 TGIF2-C20orf24A0A0A6YYL0 155 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 IGHV3-16A0A0C4DH30 117 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 A0A1B0GUT8 65 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 CBY3A6NI87 242 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 COLCA2A8K830 154 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 RASL11AQ6T310 242 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 C16orf74Q96GX8 76 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 TPPP3Q9BW30 176 aa12.7□□□□□ -0.38
SQSTM1-209ENST00000504627 RNASE3P12724 160 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-209ENST00000504627 LYZL1Q6UWQ5 148 aa12.69□□□□□ -0.38
SQSTM1-209ENST00000504627 C15orf53Q8NAA6 179 aa12.69□□□□□ -0.38
SQSTM1-209ENST00000504627 SCRT2Q9NQ03 307 aa12.69□□□□□ -0.38
SQSTM1-209ENST00000504627 DNAH2Q9P225 4427 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 IGLV2-18A0A075B6J9 118 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 A0A1B0GW15 77 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 A0A1B0GXF2 115 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 F5H768 121 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 GNRH2O43555 120 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms