RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 MAGI3Q5TCQ9 1506 aa3.23□□□□□ -1.89
NIPBL-204ENST00000504430 USP54Q70EL1 1684 aa3.23□□□□□ -1.89
NIPBL-204ENST00000504430 CCL16O15467 120 aa3.23□□□□□ -1.89
NIPBL-204ENST00000504430 HCG22E2RYF7 251 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 PRO0461Q9UI25 63 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 KDM6BO15054 1643 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 MEGF6O75095 1541 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 HFM1A2PYH4 1435 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 PRRC2BQ5JSZ5 2229 aaKnown RBP3.22□□□□□ -1.89
NIPBL-204ENST00000504430 IGHV3-53P01767 116 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 FXYD2P54710 66 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 RPRMLQ8N4K4 120 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 LRP5O75197 1615 aa3.22□□□□□ -1.89
NIPBL-204ENST00000504430 IGLV2-18A0A075B6J9 118 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 ATOX1O00244 68 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 IGKV3-20P01619 116 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 PIPP12273 146 aaPredicted RBP3.21□□□□□ -1.89
NIPBL-204ENST00000504430 ZNF345Q14585 488 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 FAM223AQ8IWN6 122 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 C9orf163Q8N9P6 203 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 TMEM141Q96I45 108 aa3.21□□□□□ -1.89
NIPBL-204ENST00000504430 SCAF11Q99590 1463 aaKnown RBP3.21□□□□□ -1.9
NIPBL-204ENST00000504430 DLG5Q8TDM6 1919 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 LMTK2Q8IWU2 1503 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 A0A0G2JND7 137 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 IGLV1-47P01700 117 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 CCL8P80075 99 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 CACFD1Q9UGQ2 172 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 STRCQ7RTU9 1775 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 SHANK2Q9UPX8 1470 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 TET3O43151 1660 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 RGPD3A6NKT7 1758 aaPredicted RBP3.21□□□□□ -1.9
NIPBL-204ENST00000504430 RIC1Q4ADV7 1423 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 TEX49A0A1B0GTD5 131 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 NAP1L6A6NFF2 107 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 Q1T7F1 81 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 MAPK1IP1LQ8NDC0 245 aa3.21□□□□□ -1.9
NIPBL-204ENST00000504430 MYO16Q9Y6X6 1858 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 PXDNLA1KZ92 1463 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 SYS1-DBNDD2H3BUS1 97 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 EFNA4P52798 201 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 CASC2Q6XLA1 102 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 LINC00299Q6ZSB3 139 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 KRTAP4-7Q9BYR0 210 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 MANBALQ9NQG1 85 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 LAMC3Q9Y6N6 1575 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 SCN4AP35499 1836 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 CDK12Q9NYV4 1490 aaPredicted RBP3.2□□□□□ -1.9
NIPBL-204ENST00000504430 PPLO60437 1756 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 C9orf116Q5BN46 136 aaPredicted RBP3.2□□□□□ -1.9
NIPBL-204ENST00000504430 SERP2Q8N6R1 65 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 ODF3Q96PU9 254 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 A0A0J9YX75 114 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 PMCHL1Q16048 86 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 LINC00483Q53H64 154 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 LCE1DQ5T752 114 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 TMEM136Q6ZRR5 245 aa3.2□□□□□ -1.9
NIPBL-204ENST00000504430 SEC16AO15027 2179 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 FREM1Q5H8C1 2179 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 TOP2AP11388 1531 aaKnown RBP3.19□□□□□ -1.9
NIPBL-204ENST00000504430 HOXB6P17509 224 aaKnown RBP3.19□□□□□ -1.9
NIPBL-204ENST00000504430 KPRPQ5T749 579 aaPredicted RBP3.19□□□□□ -1.9
NIPBL-204ENST00000504430 NDUFB11Q9NX14 153 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 DOCK10Q96BY6 2186 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 DISP1Q96F81 1524 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 LTBP4Q8N2S1 1624 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 IGLV7-43P04211 117 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 PLIN4Q96Q06 1357 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 PATJQ8NI35 1801 aa3.19□□□□□ -1.9
NIPBL-204ENST00000504430 MRPL35Q9NZE8 188 aaKnown RBP3.18□□□□□ -1.9
NIPBL-204ENST00000504430 UGGT2Q9NYU1 1516 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 ARFGEF3Q5TH69 2177 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 TRAV2A0A0B4J234 112 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 C10orf142B7Z368 130 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 ZNF791Q3KP31 576 aaPredicted RBP3.18□□□□□ -1.9
NIPBL-204ENST00000504430 SLX4Q8IY92 1834 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 PCSK5Q92824 1860 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 IGLV3-16A0A075B6K0 115 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 A0A1B0GU33 70 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 C17orf112F2Z3M2 114 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 SPANXN1Q5VSR9 72 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 C12orf73Q69YU5 71 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 SLC48A1Q6P1K1 146 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 COL24A1Q17RW2 1714 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 MROH1Q8NDA8 1641 aa3.18□□□□□ -1.9
NIPBL-204ENST00000504430 PTPRMP28827 1452 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 RPL7L1Q6DKI1 246 aaKnown RBP3.17□□□□□ -1.9
NIPBL-204ENST00000504430 C9orf106Q8NAJ2 232 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 TRAV13-2A0A0B4J235 113 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 MOBPQ13875 183 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 CSAG1Q6PB30 78 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 SDK1Q7Z5N4 2213 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 TUBGCP6Q96RT7 1819 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 EDC4Q6P2E9 1401 aaKnown RBP3.17□□□□□ -1.9
NIPBL-204ENST00000504430 H7BZZ5 65 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 MPV17P39210 176 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 MUCL1Q96DR8 90 aa3.17□□□□□ -1.9
NIPBL-204ENST00000504430 ST20-AS1Q8NBB2 130 aa3.16□□□□□ -1.9
NIPBL-204ENST00000504430 NHP2Q9NX24 153 aaKnown RBP3.16□□□□□ -1.9
NIPBL-204ENST00000504430 S4R3C0 116 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms