RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 PYYP10082 97 aa0.07□□□□□ -2.4
CD46-216ENST00000490278 TMEM244Q5VVB8 128 aa0.07□□□□□ -2.4
CD46-216ENST00000490278 BANF2Q9H503 90 aa0.07□□□□□ -2.4
CD46-216ENST00000490278 DNAJC15Q9Y5T4 150 aa0.07□□□□□ -2.4
CD46-216ENST00000490278 HELZP42694 1942 aaKnown RBP0.07□□□□□ -2.4
CD46-216ENST00000490278 KDM5CP41229 1560 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 XIRP1Q702N8 1843 aaKnown RBP0.06□□□□□ -2.4
CD46-216ENST00000490278 A0A1B0GW64 132 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 DEGS1O15121 323 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 TNFSF15O95150 251 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 SCTP09683 121 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 HLA-DRB4P13762 266 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 SPRR2GQ9BYE4 73 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 BET1LQ9NYM9 111 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 HLA-DRB4X5D2U9 266 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 CCDC171Q6TFL3 1326 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 ABCA1O95477 2261 aa0.06□□□□□ -2.4
CD46-216ENST00000490278 TTC28Q96AY4 2481 aa0.05□□□□□ -2.4
CD46-216ENST00000490278 TFF1P04155 84 aa0.05□□□□□ -2.4
CD46-216ENST00000490278 CMPK1P30085 196 aa0.05□□□□□ -2.4
CD46-216ENST00000490278 TCTE3Q8IZS6 198 aa0.05□□□□□ -2.4
CD46-216ENST00000490278 MAGOHBQ96A72 148 aaKnown RBP0.05□□□□□ -2.4
CD46-216ENST00000490278 PRR15LQ9BU68 103 aa0.05□□□□□ -2.4
CD46-216ENST00000490278 SPANXCQ9NY87 97 aa0.05□□□□□ -2.4
CD46-216ENST00000490278 MAP2P11137 1827 aaKnown RBP0.05□□□□□ -2.4
CD46-216ENST00000490278 IGF2RP11717 2491 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 F2Z2F3 143 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 ZNF670-ZNF695F2Z2N8 137 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 RBP4P02753 201 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 EMX2Q04743 252 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 SNX29P2Q8IUI4 249 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 ATP6V0E2Q8NHE4 81 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 SPANXA1Q9NS26 97 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 HIGD1AQ9Y241 93 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 NOP16Q9Y3C1 178 aaKnown RBP0.04□□□□□ -2.4
CD46-216ENST00000490278 SSPOA2VEC9 5147 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 CACNA1HO95180 2353 aa0.04□□□□□ -2.4
CD46-216ENST00000490278 ARAP1Q96P48 1450 aa0.03□□□□□ -2.4
CD46-216ENST00000490278 PTPRZ1P23471 2315 aaPredicted RBP0.03□□□□□ -2.4
CD46-216ENST00000490278 ELOF1P60002 83 aaKnown RBP0.03□□□□□ -2.4
CD46-216ENST00000490278 DYNLRB2Q8TF09 96 aa0.03□□□□□ -2.4
CD46-216ENST00000490278 UHRF1BP1LA0JNW5 1464 aa0.03□□□□□ -2.41
CD46-216ENST00000490278 ABCA4P78363 2273 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 ZFYVE26Q68DK2 2539 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 BORCS7-ASMTA0A0B4J1R7 106 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 TCRBV3S1A0A5B6 114 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 YPEL1O60688 119 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 SPINK1P00995 79 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 SLC25A6P12236 298 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 CCDC153Q494R4 210 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 Q5BKY6 102 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 OR2T2Q6IF00 324 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 DMBT1Q9UGM3 2413 aaPredicted RBP0.02□□□□□ -2.41
CD46-216ENST00000490278 JMJD1CQ15652 2540 aa0.02□□□□□ -2.41
CD46-216ENST00000490278 MACF1Q9UPN3 7388 aaKnown RBP0.01□□□□□ -2.41
CD46-216ENST00000490278 CLLU1Q5K131 121 aa0.01□□□□□ -2.41
CD46-216ENST00000490278 TAC4Q86UU9 113 aa0.01□□□□□ -2.41
CD46-216ENST00000490278 NDUFA11Q86Y39 141 aa0.01□□□□□ -2.41
CD46-216ENST00000490278 BPESC1Q9GZL8 116 aa0.01□□□□□ -2.41
CD46-216ENST00000490278 MRPL40Q9NQ50 206 aaKnown RBP0.01□□□□□ -2.41
CD46-216ENST00000490278 COL7A1Q02388 2944 aa0.01□□□□□ -2.41
CD46-216ENST00000490278 ABCA12Q86UK0 2595 aa0□□□□□ -2.41
CD46-216ENST00000490278 LRP1Q07954 4544 aaKnown RBP0□□□□□ -2.41
CD46-216ENST00000490278 PLXNA2O75051 1894 aa0□□□□□ -2.41
CD46-216ENST00000490278 SOGA1O94964 1423 aa0□□□□□ -2.41
CD46-216ENST00000490278 DBIP07108 87 aaKnown RBP0□□□□□ -2.41
CD46-216ENST00000490278 B2MP61769 119 aa0□□□□□ -2.41
CD46-216ENST00000490278 ATP11AUNQ6ZP68 121 aa0□□□□□ -2.41
CD46-216ENST00000490278 CYP2G1PQ6ZSU1 146 aa0□□□□□ -2.41
CD46-216ENST00000490278 CELSR1Q9NYQ6 3014 aa0□□□□□ -2.41
CD46-216ENST00000490278 UBR5O95071 2799 aaPredicted RBP-0□□□□□ -2.41
CD46-216ENST00000490278 PIEZO1Q92508 2521 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 CASZ1Q86V15 1759 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 CDK13Q14004 1512 aaKnown RBP-0.01□□□□□ -2.41
CD46-216ENST00000490278 RBAKDNA6NC62 111 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 J3QLW9 94 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 IFI27L1Q96BM0 104 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 ERG28Q9UKR5 140 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 OTOGQ6ZRI0 2925 aa-0.01□□□□□ -2.41
CD46-216ENST00000490278 TNS1Q9HBL0 1735 aaKnown RBP-0.01□□□□□ -2.41
CD46-216ENST00000490278 IGSF10Q6WRI0 2623 aa-0.02□□□□□ -2.41
CD46-216ENST00000490278 LAMC3Q9Y6N6 1575 aa-0.02□□□□□ -2.41
CD46-216ENST00000490278 PTPRMP28827 1452 aa-0.03□□□□□ -2.41
CD46-216ENST00000490278 CCDC179H3BU77 68 aa-0.03□□□□□ -2.41
CD46-216ENST00000490278 M0R2P5 195 aa-0.03□□□□□ -2.41
CD46-216ENST00000490278 MORN2Q502X0 79 aa-0.03□□□□□ -2.41
CD46-216ENST00000490278 LSM2Q9Y333 95 aaKnown RBP-0.03□□□□□ -2.41
CD46-216ENST00000490278 UNC13BO14795 1591 aa-0.03□□□□□ -2.41
CD46-216ENST00000490278 MED13LQ71F56 2210 aa-0.03□□□□□ -2.41
CD46-216ENST00000490278 NCOR2Q9Y618 2525 aa-0.04□□□□□ -2.42
CD46-216ENST00000490278 ZNF142P52746 1687 aaPredicted RBP-0.04□□□□□ -2.42
CD46-216ENST00000490278 GVQW2A0A096LPI5 108 aaPredicted RBP-0.04□□□□□ -2.42
CD46-216ENST00000490278 COX4I1P13073 169 aa-0.04□□□□□ -2.42
CD46-216ENST00000490278 COX6A2Q02221 97 aa-0.04□□□□□ -2.42
CD46-216ENST00000490278 SSBP1Q04837 148 aaKnown RBP-0.04□□□□□ -2.42
CD46-216ENST00000490278 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.04□□□□□ -2.42
CD46-216ENST00000490278 HRNRQ86YZ3 2850 aaPredicted RBP-0.04□□□□□ -2.42
CD46-216ENST00000490278 VIRMAQ69YN4 1812 aaKnown RBP-0.05□□□□□ -2.42
CD46-216ENST00000490278 A0A087WTM6 91 aa-0.05□□□□□ -2.42
CD46-216ENST00000490278 CCL3L1P16619 93 aa-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms