RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SCRT2Q9NQ03 307 aa9.16□□□□□ -0.94
HDAC6-230ENST00000488543 FBN1P35555 2871 aaKnown RBP9.16□□□□□ -0.94
HDAC6-230ENST00000488543 TMEM189A5PLL7 270 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 FAM231BA6NCW3 169 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 LGALS9O00182 355 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 CT45A10P0DMU9 189 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 HOXD3P31249 432 aaPredicted RBP9.15□□□□□ -0.94
HDAC6-230ENST00000488543 SYNJ2BPP57105 145 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 SLC25A34Q6PIV7 304 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 KLHL30-AS1Q8NEE0 82 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 OR11H1Q8NG94 326 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 ST20Q9HBF5 79 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 SIGLEC8Q9NYZ4 499 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 PROK1P58294 105 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 KRTAP10-3P60369 221 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 ZNF738Q8NE65 137 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 ORAOV1Q8WV07 137 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 ZNF747Q9BV97 191 aa9.15□□□□□ -0.94
HDAC6-230ENST00000488543 NDUFA7O95182 113 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 SLURP1P55000 103 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 BVES-AS1Q5T3Y7 98 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 C9orf47Q6ZRZ4 202 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 TAX1BP3O14907 124 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 VAMP3Q15836 100 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 MRPL51Q4U2R6 128 aaKnown RBP9.14□□□□□ -0.95
HDAC6-230ENST00000488543 FAM162BQ5T6X4 162 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 PRELID3AQ96N28 172 aa9.14□□□□□ -0.95
HDAC6-230ENST00000488543 NPYP01303 97 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 LINC01545Q5VT33 79 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 Q6ZQT7 251 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 C4orf3Q8WVX3 66 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 HSPB8Q9UJY1 196 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 IGKV3-7A0A075B6H7 116 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 DEFB1P60022 68 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 RPL11P62913 178 aaKnown RBP9.13□□□□□ -0.95
HDAC6-230ENST00000488543 UBE2V1Q13404 147 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 TWIST1Q15672 202 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 ZNF575Q86XF7 245 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-230ENST00000488543 C1orf43Q9BWL3 253 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 VWFP04275 2813 aa9.13□□□□□ -0.95
HDAC6-230ENST00000488543 GATA1P15976 413 aaPredicted RBP9.12□□□□□ -0.95
HDAC6-230ENST00000488543 CACNG7P62955 275 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 ADAMTSL5Q6ZMM2 481 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 OR1N2Q8NGR9 330 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 DCANP1Q8TF63 244 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 C18orf15Q96N68 181 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 NAA38Q9BRA0 125 aaKnown RBP9.12□□□□□ -0.95
HDAC6-230ENST00000488543 EVI2AP22794 236 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 LINC01559Q495D7 138 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 FAM104BQ5XKR9 115 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 C2orf91Q6ZV80 131 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 OR10AG1Q8NH19 301 aa9.12□□□□□ -0.95
HDAC6-230ENST00000488543 ORM1P02763 201 aa9.11□□□□□ -0.95
HDAC6-230ENST00000488543 TMEM78Q5T7P6 136 aa9.11□□□□□ -0.95
HDAC6-230ENST00000488543 RAX2Q96IS3 184 aa9.11□□□□□ -0.95
HDAC6-230ENST00000488543 LINC01619G3V211 115 aa9.11□□□□□ -0.95
HDAC6-230ENST00000488543 OVOL1O14753 267 aa9.11□□□□□ -0.95
HDAC6-230ENST00000488543 DLX4Q92988 240 aaPredicted RBP9.11□□□□□ -0.95
HDAC6-230ENST00000488543 NSUN5P1Q3KNT7 163 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 OR4C5Q8NGB2 326 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 DPF1Q92782 380 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 MS4A6AQ9H2W1 248 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 SORL1Q92673 2214 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 SPRY2O43597 315 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 CKS2P33552 79 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 AMMECR1LQ6DCA0 310 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 ORMDL3Q8N138 153 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 FER1L6-AS1Q8NA97 138 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 TSSC4Q9Y5U2 329 aaPredicted RBP9.1□□□□□ -0.95
HDAC6-230ENST00000488543 TRRAPQ9Y4A5 3859 aa9.1□□□□□ -0.95
HDAC6-230ENST00000488543 ADARB2-AS1A8MUL3 147 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 F6UB75 175 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 CDKN1BP46527 198 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 PRR9Q5T870 116 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 ZNF493Q6ZR52 646 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 GATD1Q8NB37 220 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 WFDC12Q8WWY7 111 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 LINC00477Q96M19 166 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 C11orf21Q9P2W6 132 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 TRAV8-6A0A0B4J262 113 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 FABP5P3A8MUU1 101 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 K7EQG2 157 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 RNF151Q2KHN1 245 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 FAM19A4Q96LR4 140 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 DKK2Q9UBU2 259 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 LENEPQ9Y5L5 61 aa9.09□□□□□ -0.95
HDAC6-230ENST00000488543 CCL24O00175 119 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 COX8AP10176 69 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 SAMD13Q5VXD3 122 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 OR10J6PQ8NGY7 276 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 TTTY13Q9BZ97 58 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 RPS20P60866 119 aaKnown RBP9.08□□□□□ -0.96
HDAC6-230ENST00000488543 Q6AWC8 147 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 DEFB125Q8N687 156 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 ZFAND2AQ8N6M9 145 aa9.08□□□□□ -0.96
HDAC6-230ENST00000488543 IGLC6P0CF74 106 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 FGF6P10767 208 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 ID1P41134 155 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 HIST1H1AQ02539 215 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms