RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 OR10J6PQ8NGY7 276 aa8.15□□□□□ -1.1
VPS52-217ENST00000478934 MRPL53Q96EL3 112 aaKnown RBP8.15□□□□□ -1.1
VPS52-217ENST00000478934 CHAC1Q9BUX1 264 aa8.15□□□□□ -1.1
VPS52-217ENST00000478934 ZNF469Q96JG9 3925 aaPredicted RBP8.15□□□□□ -1.11
VPS52-217ENST00000478934 DPM2O94777 84 aa8.15□□□□□ -1.11
VPS52-217ENST00000478934 ZMAT4Q9H898 229 aa8.15□□□□□ -1.11
VPS52-217ENST00000478934 JPT2Q9H910 190 aa8.15□□□□□ -1.11
VPS52-217ENST00000478934 NHP2Q9NX24 153 aaKnown RBP8.15□□□□□ -1.11
VPS52-217ENST00000478934 LINC01546A6NGU7 62 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 IGKV3-20P01619 116 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 HIST2H2BDQ6DRA6 164 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 MYOZ3Q8TDC0 251 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 RIPPLY3P57055 190 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 DEFB112Q30KQ8 113 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 UFSP1Q6NVU6 142 aa8.14□□□□□ -1.11
VPS52-217ENST00000478934 IGLV1-40P01703 118 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 RASL10AQ92737 203 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 LINC00477Q96M19 166 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 DUX5Q96PT3 197 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 SPCS1Q9Y6A9 102 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 MYO9AB2RTY4 2548 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 EMP1P54849 157 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 USMG5Q96IX5 58 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 PHLDA3Q9Y5J5 127 aa8.13□□□□□ -1.11
VPS52-217ENST00000478934 A0A1W2PPM0 123 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 RNASE3P12724 160 aaKnown RBP8.12□□□□□ -1.11
VPS52-217ENST00000478934 MTURNQ8N3F0 131 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 NAV2Q8IVL1 2488 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 NBPF19A0A087WUL8 3843 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 IGHV4-4A0A075B6R2 117 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 TRAV21A0A0B4J279 112 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 K7EP34 96 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 SIVA1O15304 175 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 SMIM2Q9BVW6 85 aa8.12□□□□□ -1.11
VPS52-217ENST00000478934 OVOL1O14753 267 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 CFHR3Q02985 330 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 SRSF1Q07955 248 aaKnown RBP eCLIP8.11□□□□□ -1.11
VPS52-217ENST00000478934 SAMD5Q5TGI4 173 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 GTF2H5Q6ZYL4 71 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 DAZ1Q9NQZ3 744 aaKnown RBP8.11□□□□□ -1.11
VPS52-217ENST00000478934 SMPXQ9UHP9 88 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 NF1P21359 2839 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 TRAV12-2A0A075B6T6 113 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 RNF223E7ERA6 249 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 ATP5LO75964 103 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 SMIM13P0DJ93 91 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 ASIPP42127 132 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 FAM19A4Q96LR4 140 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 SCGB3A1Q96QR1 104 aa8.11□□□□□ -1.11
VPS52-217ENST00000478934 A0A087WX48 190 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 TRAV12-3A0A0B4J271 114 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 B4DSR2 109 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.1□□□□□ -1.11
VPS52-217ENST00000478934 NDUFS8O00217 210 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 ZNF688P0C7X2 276 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 SUMO2P61956 95 aaKnown RBP8.1□□□□□ -1.11
VPS52-217ENST00000478934 NIPBLQ6KC79 2804 aaeCLIP8.1□□□□□ -1.11
VPS52-217ENST00000478934 A0A087WWL8 130 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 EPG5Q9HCE0 2579 aa8.1□□□□□ -1.11
VPS52-217ENST00000478934 SONP18583 2426 aaKnown RBP8.09□□□□□ -1.11
VPS52-217ENST00000478934 TGFAP01135 160 aa8.09□□□□□ -1.11
VPS52-217ENST00000478934 DCANP1Q8TF63 244 aa8.09□□□□□ -1.11
VPS52-217ENST00000478934 ATP6V0BQ99437 205 aa8.09□□□□□ -1.11
VPS52-217ENST00000478934 FABP2P12104 132 aa8.09□□□□□ -1.11
VPS52-217ENST00000478934 CEND1Q8N111 149 aa8.09□□□□□ -1.11
VPS52-217ENST00000478934 LENEPQ9Y5L5 61 aa8.09□□□□□ -1.11
VPS52-217ENST00000478934 SETD2Q9BYW2 2564 aaPredicted RBP8.08□□□□□ -1.12
VPS52-217ENST00000478934 PSMB8P28062 276 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 PSMG4Q5JS54 123 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 SFTA2Q6UW10 78 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 AMTNQ6UX39 209 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 C2orf66Q6UXQ4 117 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 HIST1H4GQ99525 98 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 AKAP9Q99996 3911 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 PRSS47A8MTI9 375 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 H3BUA1 57 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 K7ERU9 68 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 KRTAP10-9P60411 292 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 FAM74A4Q5TZK3 123 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 PHLDA1Q8WV24 401 aaPredicted RBP8.08□□□□□ -1.12
VPS52-217ENST00000478934 CSTL1Q9H114 145 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 DPH3P1Q9H4G8 78 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 CYSLTR1Q9Y271 337 aa8.08□□□□□ -1.12
VPS52-217ENST00000478934 CHTOPQ9Y3Y2 248 aaKnown RBP8.08□□□□□ -1.12
VPS52-217ENST00000478934 DUSP14O95147 198 aaKnown RBP8.07□□□□□ -1.12
VPS52-217ENST00000478934 SYNJ2BPP57105 145 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 RPL39P62891 51 aaKnown RBP8.07□□□□□ -1.12
VPS52-217ENST00000478934 RPL24P83731 157 aaKnown RBP8.07□□□□□ -1.12
VPS52-217ENST00000478934 MRAP2Q96G30 205 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 F8VRH5 84 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 CD7P09564 240 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 LINC00315P59091 139 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 C18orf65Q6ZTR6 163 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 KLHL30-AS1Q8NEE0 82 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 MDFICQ9P1T7 246 aa8.07□□□□□ -1.12
VPS52-217ENST00000478934 UBR5O95071 2799 aaPredicted RBP8.07□□□□□ -1.12
VPS52-217ENST00000478934 F5H697 171 aa8.06□□□□□ -1.12
VPS52-217ENST00000478934 PRM2P04554 102 aa8.06□□□□□ -1.12
VPS52-217ENST00000478934 BAALCQ8WXS3 180 aa8.06□□□□□ -1.12
VPS52-217ENST00000478934 BBC3Q96PG8 261 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms