RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 PRIMA1Q86XR5 153 aa11.03□□□□□ -0.64
NPHP4-208ENST00000478423 IGLL1P15814 213 aa11.03□□□□□ -0.64
NPHP4-208ENST00000478423 IGHG2P01859 326 aa11.03□□□□□ -0.64
NPHP4-208ENST00000478423 M0R2P5 195 aa11.02□□□□□ -0.65
NPHP4-208ENST00000478423 EREGO14944 169 aa11.02□□□□□ -0.65
NPHP4-208ENST00000478423 MRPL35Q9NZE8 188 aaKnown RBP11.02□□□□□ -0.65
NPHP4-208ENST00000478423 TSSC4Q9Y5U2 329 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-208ENST00000478423 PRAC2D3DTV9 90 aa11.02□□□□□ -0.65
NPHP4-208ENST00000478423 PAX4O43316 350 aa11.02□□□□□ -0.65
NPHP4-208ENST00000478423 PMVKQ15126 192 aa11.02□□□□□ -0.65
NPHP4-208ENST00000478423 WIPF2Q8TF74 440 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-208ENST00000478423 ZNF625Q96I27 306 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-208ENST00000478423 WI2-2373I1.2A0A1W2PRP0 233 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 C16orf54Q6UWD8 224 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 MSRB1Q9NZV6 116 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 F5H768 121 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 KIR3DS1Q14943 382 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 LAMA2P24043 3122 aaKnown RBP11.01□□□□□ -0.65
NPHP4-208ENST00000478423 LRP4O75096 1905 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 IGKV1D-37A0A075B6S9 117 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-208ENST00000478423 IGF2BP2-AS1Q96M15 143 aa11.01□□□□□ -0.65
NPHP4-208ENST00000478423 GATA1P15976 413 aaPredicted RBP11□□□□□ -0.65
NPHP4-208ENST00000478423 DAD1P61803 113 aa11□□□□□ -0.65
NPHP4-208ENST00000478423 COA6Q5JTJ3 125 aaKnown RBP11□□□□□ -0.65
NPHP4-208ENST00000478423 MYMXA0A1B0GTQ4 84 aa11□□□□□ -0.65
NPHP4-208ENST00000478423 LGALS9BQ3B8N2 356 aa11□□□□□ -0.65
NPHP4-208ENST00000478423 LGALS9CQ6DKI2 356 aa11□□□□□ -0.65
NPHP4-208ENST00000478423 DLEU1O43261 78 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 APRG1Q8IVJ8 170 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 KLF12Q9Y4X4 402 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 DSCAML1Q8TD84 2053 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 TMEM141Q96I45 108 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 C20orf78Q9BR46 151 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 TRAV8-2A0A0B4J237 113 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 LINC01548A6NM66 108 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 F8VRH5 84 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 DEFB1P60022 68 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 TTC32Q5I0X7 151 aa10.99□□□□□ -0.65
NPHP4-208ENST00000478423 SPAG8Q99932 426 aaPredicted RBP10.99□□□□□ -0.65
NPHP4-208ENST00000478423 IGHV4OR15-8A0A075B7B6 117 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 A0A087WW49 117 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 ODF3BA8MYP8 253 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 EIF4EBP1Q13541 118 aaPredicted RBP10.98□□□□□ -0.65
NPHP4-208ENST00000478423 SNHG12Q9BXW3 62 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 TRBV25-1A0A075B6N4 114 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 ZNF503Q96F45 646 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 UNQ9165/PRO28630Q6UXU0 137 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 CD5LO43866 347 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 HLA-DRB4P13762 266 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 PCP4P48539 62 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 ZNF747Q9BV97 191 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 HLA-DRB4X5D2U9 266 aa10.98□□□□□ -0.65
NPHP4-208ENST00000478423 GTSF1Q8WW33 167 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 SLC25A20O43772 301 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 NUPR1O60356 82 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 TRBV12-3P01733 135 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 SS18Q15532 418 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 JPT2Q9H910 190 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 PGPEP1Q9NXJ5 209 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 LAMA3Q16787 3333 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 S100A7L2Q5SY68 101 aa10.97□□□□□ -0.65
NPHP4-208ENST00000478423 DKK2Q9UBU2 259 aa10.96□□□□□ -0.65
NPHP4-208ENST00000478423 MKI67P46013 3256 aaKnown RBP10.96□□□□□ -0.66
NPHP4-208ENST00000478423 FRMD6-AS1P0C7T7 363 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 ZNF493Q6ZR52 646 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 TMEM243Q9BU79 118 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 U3KQE9 123 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 A6NDX4 124 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 FSTL3O95633 263 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 GPHB5Q86YW7 130 aa10.96□□□□□ -0.66
NPHP4-208ENST00000478423 C2orf70A6NJV1 201 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 VWC2LB2RUY7 222 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 K7EMT4 169 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 KLF5Q13887 457 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-208ENST00000478423 C5orf42Q9H799 3197 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 TNFRSF13BO14836 293 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-208ENST00000478423 ZNF48Q96MX3 618 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-208ENST00000478423 NOP10Q9NPE3 64 aaKnown RBP10.95□□□□□ -0.66
NPHP4-208ENST00000478423 APOC4P55056 127 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 SRSF2Q01130 221 aaKnown RBP10.95□□□□□ -0.66
NPHP4-208ENST00000478423 GAGE6Q13070 117 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 CDPF1Q6NVV7 123 aa10.95□□□□□ -0.66
NPHP4-208ENST00000478423 MRPL52Q86TS9 123 aaKnown RBP10.95□□□□□ -0.66
NPHP4-208ENST00000478423 COX8AP10176 69 aa10.94□□□□□ -0.66
NPHP4-208ENST00000478423 MAJINQ3KP22 176 aa10.94□□□□□ -0.66
NPHP4-208ENST00000478423 UBE2DNLQ8IWF7 75 aa10.94□□□□□ -0.66
NPHP4-208ENST00000478423 TSPAN13O95857 204 aa10.94□□□□□ -0.66
NPHP4-208ENST00000478423 ACANP16112 2415 aa10.93□□□□□ -0.66
NPHP4-208ENST00000478423 LOXL1Q08397 574 aaPredicted RBP10.93□□□□□ -0.66
NPHP4-208ENST00000478423 RNASE13Q5GAN3 156 aaKnown RBP10.93□□□□□ -0.66
NPHP4-208ENST00000478423 GATD1Q8NB37 220 aa10.93□□□□□ -0.66
NPHP4-208ENST00000478423 UBE2V1Q13404 147 aa10.93□□□□□ -0.66
NPHP4-208ENST00000478423 RPL39LQ96EH5 51 aaKnown RBP10.93□□□□□ -0.66
NPHP4-208ENST00000478423 CCDC140Q96MF4 163 aa10.93□□□□□ -0.66
NPHP4-208ENST00000478423 A0A096LPF7 62 aa10.92□□□□□ -0.66
NPHP4-208ENST00000478423 C11orf71Q6IPW1 123 aa10.92□□□□□ -0.66
NPHP4-208ENST00000478423 C9orf47Q6ZRZ4 202 aa10.92□□□□□ -0.66
NPHP4-208ENST00000478423 ATXN8Q156A1 80 aa10.92□□□□□ -0.66
NPHP4-208ENST00000478423 PRSS29PA6NIE9 313 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms