RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 PGPEP1LA6NFU8 196 aa13.94□□□□□ -0.18
COL9A3-204ENST00000463487 ARMS2P0C7Q2 107 aa13.94□□□□□ -0.18
COL9A3-204ENST00000463487 CSMD3Q7Z407 3707 aa13.93□□□□□ -0.18
COL9A3-204ENST00000463487 TRGV4A0A0C4DH28 118 aa13.93□□□□□ -0.18
COL9A3-204ENST00000463487 C19orf71A6NCJ1 209 aa13.93□□□□□ -0.18
COL9A3-204ENST00000463487 IGHV3-53P01767 116 aa13.93□□□□□ -0.18
COL9A3-204ENST00000463487 CLLU1Q5K131 121 aa13.93□□□□□ -0.18
COL9A3-204ENST00000463487 OR2D3Q8NGH3 330 aa13.93□□□□□ -0.18
COL9A3-204ENST00000463487 LCE6AA0A183 80 aa13.92□□□□□ -0.18
COL9A3-204ENST00000463487 H3BNG1 76 aa13.92□□□□□ -0.18
COL9A3-204ENST00000463487 RPL19P84098 196 aaKnown RBP13.92□□□□□ -0.18
COL9A3-204ENST00000463487 ZFP82Q8N141 532 aa13.92□□□□□ -0.18
COL9A3-204ENST00000463487 OCC1Q8TAD7 63 aa13.92□□□□□ -0.18
COL9A3-204ENST00000463487 TRAV26-1A0A087WT03 109 aa13.91□□□□□ -0.18
COL9A3-204ENST00000463487 A8MWV9 139 aa13.91□□□□□ -0.18
COL9A3-204ENST00000463487 HOXA5P20719 270 aa13.91□□□□□ -0.18
COL9A3-204ENST00000463487 PRO0255Q9UI72 69 aa13.91□□□□□ -0.18
COL9A3-204ENST00000463487 NUDT3O95989 172 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 P0DMU3 169 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 FAM231AP0DMU4 169 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 FAM231CP0DMU5 169 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 LGALS9CQ6DKI2 356 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 LINC00476Q8WZB0 136 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 HHLA3Q9XRX5 114 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 STARD9Q9P2P6 4700 aa13.9□□□□□ -0.18
COL9A3-204ENST00000463487 MUC4Q99102 2169 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 K7EN84 100 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 PAX4O43316 350 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 LY6G6CO95867 125 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 SFTA3P0C7M3 94 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 ZNF479Q96JC4 524 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 SCRT2Q9NQ03 307 aa13.89□□□□□ -0.19
COL9A3-204ENST00000463487 A0A0J9YY99 117 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 M0R381 172 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 RS1O15537 224 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 OR5AL1P0C617 328 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 IFITM2Q01629 132 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 FHL2Q14192 279 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 TMEM241Q24JQ0 296 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 SOHLH1Q5JUK2 328 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 NUDT10Q8NFP7 164 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 NUDT11Q96G61 164 aa13.88□□□□□ -0.19
COL9A3-204ENST00000463487 RPP21Q9H633 154 aaKnown RBP13.88□□□□□ -0.19
COL9A3-204ENST00000463487 ERVFC1-1P60608 527 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 SRSF3P84103 164 aaKnown RBP13.87□□□□□ -0.19
COL9A3-204ENST00000463487 SPANXN1Q5VSR9 72 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 CFAP126Q5VTH2 177 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 LINC01551Q86U37 167 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 FER1L6-AS1Q8NA97 138 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 TPPP3Q9BW30 176 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 RNASE7Q9H1E1 156 aaKnown RBP13.87□□□□□ -0.19
COL9A3-204ENST00000463487 TENM2Q9NT68 2774 aa13.87□□□□□ -0.19
COL9A3-204ENST00000463487 A0A1W2PPQ1 181 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 RHODO00212 210 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 SNAI2O43623 268 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 CRYBA4P53673 196 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 DMRTA1Q5VZB9 504 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 FAM231DQ6ZW35 169 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 UBE2DNLQ8IWF7 75 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 POM121L12Q8N7R1 296 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 NAT8Q9UHE5 227 aa13.86□□□□□ -0.19
COL9A3-204ENST00000463487 F2Z2F3 143 aa13.85□□□□□ -0.19
COL9A3-204ENST00000463487 GATCO43716 136 aaKnown RBP13.85□□□□□ -0.19
COL9A3-204ENST00000463487 ZFP2Q6ZN57 461 aa13.85□□□□□ -0.19
COL9A3-204ENST00000463487 ZNF575Q86XF7 245 aa13.85□□□□□ -0.19
COL9A3-204ENST00000463487 C15orf54Q8N8G6 183 aa13.85□□□□□ -0.19
COL9A3-204ENST00000463487 SSBP4Q9BWG4 385 aaPredicted RBP13.85□□□□□ -0.19
COL9A3-204ENST00000463487 ICOSQ9Y6W8 199 aa13.85□□□□□ -0.19
COL9A3-204ENST00000463487 C9JQL5 133 aa13.84□□□□□ -0.19
COL9A3-204ENST00000463487 A8MWL6 223 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 CCL18P55774 89 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 CACNG7P62955 275 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 MRPL23Q16540 153 aaKnown RBP13.83□□□□□ -0.2
COL9A3-204ENST00000463487 CT83Q5H943 113 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 OR10AG1Q8NH19 301 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 SFRP2Q96HF1 295 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 VSIG2Q96IQ7 327 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 PRADC1Q9BSG0 188 aa13.83□□□□□ -0.2
COL9A3-204ENST00000463487 NXPH4O95158 308 aa13.82□□□□□ -0.2
COL9A3-204ENST00000463487 IGLC6P0CF74 106 aa13.82□□□□□ -0.2
COL9A3-204ENST00000463487 GZMBP10144 247 aa13.82□□□□□ -0.2
COL9A3-204ENST00000463487 GATA1P15976 413 aaPredicted RBP13.82□□□□□ -0.2
COL9A3-204ENST00000463487 RHOHQ15669 191 aa13.82□□□□□ -0.2
COL9A3-204ENST00000463487 ADIRFQ15847 76 aa13.82□□□□□ -0.2
COL9A3-204ENST00000463487 RNF212Q495C1 297 aa13.82□□□□□ -0.2
COL9A3-204ENST00000463487 IGHV3-73A0A0B4J1V6 119 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 TRBV6-4A0A1B0GX49 114 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 SMIM17P0DL12 118 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 FAM3BP58499 235 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-204ENST00000463487 FAM74A4Q5TZK3 123 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 UQCC3Q6UW78 93 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 AP1S3Q96PC3 154 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 OSTCQ9NRP0 149 aa13.81□□□□□ -0.2
COL9A3-204ENST00000463487 SRIP30626 198 aa13.8□□□□□ -0.2
COL9A3-204ENST00000463487 RPL23P62829 140 aaKnown RBP13.8□□□□□ -0.2
COL9A3-204ENST00000463487 SH2D6Q7Z4S9 175 aa13.8□□□□□ -0.2
COL9A3-204ENST00000463487 GYPEP15421 78 aa13.79□□□□□ -0.2
COL9A3-204ENST00000463487 WDR73Q6P4I2 378 aa13.79□□□□□ -0.2
COL9A3-204ENST00000463487 ISOC2Q96AB3 205 aa13.79□□□□□ -0.2
COL9A3-204ENST00000463487 BORCS7Q96B45 105 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms