RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 ORM1P02763 201 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 MT-ND6P03923 174 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 TRGC2P03986 189 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 TYMSP04818 313 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 S100A8P05109 93 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 ZNF705DP0CH99 300 aaPredicted RBP2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 ZNF705BP0CI00 300 aaPredicted RBP2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 LEPP41159 167 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 RPS20P60866 119 aaKnown RBP2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 ACTL10Q5JWF8 245 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 ATP5L2Q7Z4Y8 100 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 NDUFA11Q86Y39 141 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 OR8A1Q8NGG7 326 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 DLX4Q92988 240 aaPredicted RBP2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 PGLYRP4Q96LB8 373 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 LINC00477Q96M19 166 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 YPEL4Q96NS1 127 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 TPPP3Q9BW30 176 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 GPR61Q9BZJ8 451 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 MS4A6AQ9H2W1 248 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 NAGKQ9UJ70 344 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 LENEPQ9Y5L5 61 aa2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 SPTAN1Q13813 2472 aaKnown RBP2.79□□□□□ -1.96
HMGB3P20-201ENST00000417997 USP9YO00507 2555 aaPredicted RBP2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 TRAV25A0A0B4J276 109 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 TRAV21A0A0B4J279 112 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 FAM231BA6NCW3 169 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 F6UB75 175 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 GPX1P07203 203 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 CSN3P07498 182 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 TRGC1P0CF51 173 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 GZMBP10144 247 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 TSPOP30536 169 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 NDUFA6P56556 154 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 DEFB131AP59861 70 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 HBBP68871 147 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 FABP9Q0Z7S8 132 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 RIGQ13278 110 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 RASL11AQ6T310 242 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 LINC00322Q6ZN03 302 aaPredicted RBP2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 Q6ZRP5 223 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 TMEM61Q8N0U2 210 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 FER1L6-AS1Q8NA97 138 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 NUP35Q8NFH5 326 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 DCANP1Q8TF63 244 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 PHLDA1Q8WV24 401 aaPredicted RBP2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 SPAG8Q99932 426 aaPredicted RBP2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 AGPAT4-IT1Q9H0P7 198 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 SAV1Q9H4B6 383 aaPredicted RBP2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 LRRK2Q5S007 2527 aa2.78□□□□□ -1.96
HMGB3P20-201ENST00000417997 SMG1Q96Q15 3661 aaKnown RBP2.78□□□□□ -1.97
HMGB3P20-201ENST00000417997 TRBV7-9A0A0J9YWB2 115 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 A0A1B0GUT8 65 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 A0A1B0GW15 77 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 C7orf71A4D174 169 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 GRIFINA4D1Z8 144 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 H3BVH4 76 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BKO60814 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 APCSP02743 223 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BJP06899 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 CRISP2P16562 243 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BOP23527 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 S100A4P26447 101 aaKnown RBP2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 S100A2P29034 98 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BBP33778 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 ASIPP42127 132 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 ZNF80P51504 273 aaPredicted RBP2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 AKR1D1P51857 326 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BDP58876 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 DEFB1P60022 68 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BCP62807 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST2H2BEQ16778 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 DEFB114Q30KQ6 69 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 ADAMTSL5Q6ZMM2 481 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 FOXI2Q6ZQN5 318 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 SMIM15Q7Z3B0 74 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 COX8CQ7Z4L0 72 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 OR2K2Q8NGT1 345 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BHQ93079 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 ODF3Q96PU9 254 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BNQ99877 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST1H2BMQ99879 126 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 GNB1LQ9BYB4 327 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 TIMM8BQ9Y5J9 83 aaPredicted RBP2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 CRYBG3Q68DQ2 2970 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 PDZD2O15018 2839 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 SPG11Q96JI7 2443 aa2.77□□□□□ -1.97
HMGB3P20-201ENST00000417997 ITPR3Q14573 2671 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 APCP25054 2843 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 NAV2Q8IVL1 2488 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 TRAV12-3A0A0B4J271 114 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 A0A0J9YX75 114 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 LOC105371267A0A1B0GV96 52 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 A0A1B0GXF2 115 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 A4D1N5 150 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 KNCNA6PVL3 124 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 OR11H12B2RN74 326 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms