RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 PAX8Q06710 450 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 ZC2HC1BQ5TFG8 222 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 FAM159AQ6UWV7 190 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 ARL17AQ8IVW1 177 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 TMEM75Q8N9X5 138 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 UBALD1Q8TB05 177 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 SRSF12Q8WXF0 261 aaKnown RBP4.21□□□□□ -1.74
CLK1-202ENST00000409403 CARD19Q96LW7 228 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 PRRG4Q9BZD6 226 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 GNG12Q9UBI6 72 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 HHLA3Q9XRX5 114 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 KIAA1549Q9HCM3 1950 aa4.21□□□□□ -1.74
CLK1-202ENST00000409403 IGKV2D-26A0A0A0MRZ7 120 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 TRAV8-4A0A0B4J246 113 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 FAM240AA0A1B0GVK7 77 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 ARMS2P0C7Q2 107 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 PYYP10082 97 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 CD24P25063 80 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 ATP5J2P56134 94 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 GNG5P63218 68 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 MZT1Q08AG7 82 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 SPRNQ5BIV9 151 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 MORN3Q6PF18 240 aaPredicted RBP4.2□□□□□ -1.74
CLK1-202ENST00000409403 C16orf47Q6ZP98 133 aaPredicted RBP4.2□□□□□ -1.74
CLK1-202ENST00000409403 SLC22A18ASQ8N1D0 253 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 ANKRD29Q8N6D5 301 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 THAP8Q8NA92 274 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 MYOZ3Q8TDC0 251 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 LINC01600Q96MT4 127 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 TRGV9Q99603 122 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 SRXN1Q9BYN0 137 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 IMUPQ9GZP8 106 aa4.2□□□□□ -1.74
CLK1-202ENST00000409403 CHCHD2Q9Y6H1 151 aaPredicted RBP4.2□□□□□ -1.74
CLK1-202ENST00000409403 ANK3Q12955 4377 aaKnown RBP4.2□□□□□ -1.74
CLK1-202ENST00000409403 IGKV1OR2-108A0A075B7D4 117 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 IGKV3D-15A0A087WSY6 115 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 TRAV12-1A0A0B4J245 112 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 IGHV3-20A0A0C4DH32 117 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 LOC389332A0A1B0GUA5 103 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 UPK2O00526 184 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 NTN3O00634 580 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 MRPL33O75394 65 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 CRLF1O75462 422 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 RNASE2P10153 161 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 RPL13AP40429 203 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 UBE2D1P51668 147 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 FOXG1P55316 489 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 RPS28P62857 69 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 LINC00305Q7Z4B0 112 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 GTSCR1Q86UQ5 136 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 LYPD1Q8N2G4 141 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 Q8N9P0 234 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 MRAPQ8TCY5 172 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 DUX5Q96PT3 197 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 FAM173AQ9BQD7 235 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 Q9H3A6 140 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 CNTRLQ7Z7A1 2325 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 TRAV2A0A0B4J234 112 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 LINC01549A6NIU2 74 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 C15orf65H3BRN8 121 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 H3BVH4 76 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 SLC25A20O43772 301 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 DUSP14O95147 198 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 LGALS1P09382 135 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 HLA-DMBP28068 263 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 LOXL1Q08397 574 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 C1orf61Q13536 156 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 MRPL51Q4U2R6 128 aaKnown RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 LINC00322Q6ZN03 302 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 C17orf82Q86X59 251 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 RASL10AQ92737 203 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 TMEM101Q96IK0 257 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 PPDPFQ9H3Y8 114 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 TMEM14CQ9P0S9 112 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 ONECUT1Q9UBC0 465 aa4.19□□□□□ -1.74
CLK1-202ENST00000409403 KLF13Q9Y2Y9 288 aaPredicted RBP4.19□□□□□ -1.74
CLK1-202ENST00000409403 HRNRQ86YZ3 2850 aaPredicted RBP4.18□□□□□ -1.74
CLK1-202ENST00000409403 EML6Q6ZMW3 1958 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 TRAV3A0A0B4J244 114 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 TRAV4A0A0B4J268 109 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 TRBV7-7A0A0K0K1E9 115 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 C16orf97H3BN30 126 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 H7C1H1 209 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 CXCL13O43927 109 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 LEPP41159 167 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 SSR4P51571 173 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 HERVK_113P61574 105 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 PRNTQ86SH4 94 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 ZCCHC24Q8N2G6 241 aaKnown RBP4.18□□□□□ -1.74
CLK1-202ENST00000409403 TIMD4Q96H15 378 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 LINC01587Q99440 93 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 KIR2DL4Q99706 377 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 MRPL20Q9BYC9 149 aaKnown RBP4.18□□□□□ -1.74
CLK1-202ENST00000409403 AKIRIN1Q9H9L7 192 aaPredicted RBP4.18□□□□□ -1.74
CLK1-202ENST00000409403 NGBQ9NPG2 151 aa4.18□□□□□ -1.74
CLK1-202ENST00000409403 HCFC1P51610 2035 aa4.17□□□□□ -1.74
CLK1-202ENST00000409403 IQCF6A8MYZ5 107 aa4.17□□□□□ -1.74
CLK1-202ENST00000409403 F8VRH5 84 aa4.17□□□□□ -1.74
CLK1-202ENST00000409403 M0R2P5 195 aa4.17□□□□□ -1.74
CLK1-202ENST00000409403 UQCRQO14949 82 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms