RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 TMEM219Q86XT9 240 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 PLEKHB2Q96CS7 222 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 CARD19Q96LW7 228 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 KIR2DL4Q99706 377 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 UTP20O75691 2785 aaKnown RBP13.52□□□□□ -0.25
SQSTM1-202ENST00000389805 RPL7P18124 248 aaKnown RBP13.52□□□□□ -0.25
SQSTM1-202ENST00000389805 TMEM78Q5T7P6 136 aa13.52□□□□□ -0.25
SQSTM1-202ENST00000389805 PRORYQ9H606 182 aa13.52□□□□□ -0.25
SQSTM1-202ENST00000389805 LINC00527Q9UJ94 153 aa13.52□□□□□ -0.25
SQSTM1-202ENST00000389805 NRACQ8N912 160 aa13.51□□□□□ -0.25
SQSTM1-202ENST00000389805 F8VRH5 84 aa13.51□□□□□ -0.25
SQSTM1-202ENST00000389805 H7C1H1 209 aa13.51□□□□□ -0.25
SQSTM1-202ENST00000389805 KLHL30-AS1Q8NEE0 82 aa13.51□□□□□ -0.25
SQSTM1-202ENST00000389805 CNFNQ9BYD5 112 aa13.51□□□□□ -0.25
SQSTM1-202ENST00000389805 IGHV3-49A0A0A0MS15 119 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 ZNF815PA8K554 130 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 TSPAN13O95857 204 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 ANXA2RQ3ZCQ2 193 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 COX8CQ7Z4L0 72 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 PRADC1Q9BSG0 188 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 PSMG3-AS1Q96PY0 264 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 SCGB3A1Q96QR1 104 aa13.5□□□□□ -0.25
SQSTM1-202ENST00000389805 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.5□□□□□ -0.252e-12■■■□□ 17
SQSTM1-202ENST00000389805 CLEC19AQ6UXS0 136 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 ANAPC13Q9BS18 74 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 CENPVL3A0A0U1RRI6 287 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 J3KRW8 73 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 IGHV4-39P01824 125 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 SPANXN1Q5VSR9 72 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 BRD3OSQ6XYD6 125 aa13.49□□□□□ -0.25
SQSTM1-202ENST00000389805 SLC25A16P16260 332 aa13.48□□□□□ -0.25
SQSTM1-202ENST00000389805 EMP1P54849 157 aa13.48□□□□□ -0.25
SQSTM1-202ENST00000389805 LINC01559Q495D7 138 aa13.48□□□□□ -0.25
SQSTM1-202ENST00000389805 NPFFO15130 113 aa13.48□□□□□ -0.25
SQSTM1-202ENST00000389805 ERG28Q9UKR5 140 aa13.47□□□□□ -0.25
SQSTM1-202ENST00000389805 FAM110DQ8TAY7 271 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-202ENST00000389805 USP9XQ93008 2570 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-202ENST00000389805 CCDC140Q96MF4 163 aa13.47□□□□□ -0.25
SQSTM1-202ENST00000389805 TCL1BO95988 128 aa13.46□□□□□ -0.25
SQSTM1-202ENST00000389805 ATP6V0E2Q8NHE4 81 aa13.46□□□□□ -0.25
SQSTM1-202ENST00000389805 MYO18BQ8IUG5 2567 aa13.46□□□□□ -0.25
SQSTM1-202ENST00000389805 B5MCH6 92 aa13.46□□□□□ -0.26
SQSTM1-202ENST00000389805 PPDPFLQ8WWR9 84 aa13.46□□□□□ -0.26
SQSTM1-202ENST00000389805 TMEM190Q8WZ59 177 aa13.45□□□□□ -0.26
SQSTM1-202ENST00000389805 ZFAND3Q9H8U3 227 aa13.45□□□□□ -0.26
SQSTM1-202ENST00000389805 CSPG4Q6UVK1 2322 aa13.45□□□□□ -0.26
SQSTM1-202ENST00000389805 TEN1Q86WV5 123 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 IGSF10Q6WRI0 2623 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 AGPAT4-IT1Q9H0P7 198 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 CUBNO60494 3623 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 IGHV4-61A0A0C4DH41 118 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 IGHV7-4-1A0A0J9YVY3 117 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 CLPSL1A2RUU4 121 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 A6NJY4 79 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 SCGB1C2P0DMR2 95 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 RPL39LQ96EH5 51 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 SMIM2Q9BVW6 85 aa13.44□□□□□ -0.26
SQSTM1-202ENST00000389805 BUB3O43684 328 aa13.43□□□□□ -0.26
SQSTM1-202ENST00000389805 C5orf56Q8N8D9 126 aa13.43□□□□□ -0.26
SQSTM1-202ENST00000389805 POLQO75417 2590 aa13.43□□□□□ -0.26
SQSTM1-202ENST00000389805 FAM208BQ5VWN6 2430 aa13.43□□□□□ -0.26
SQSTM1-202ENST00000389805 ANKRD29Q8N6D5 301 aa13.43□□□□□ -0.26
SQSTM1-202ENST00000389805 M0R381 172 aa13.42□□□□□ -0.26
SQSTM1-202ENST00000389805 UBE2D1P51668 147 aa13.42□□□□□ -0.26
SQSTM1-202ENST00000389805 NEXN-AS1Q8NBZ9 246 aa13.42□□□□□ -0.26
SQSTM1-202ENST00000389805 RASL10AQ92737 203 aa13.42□□□□□ -0.26
SQSTM1-202ENST00000389805 ACACBO00763 2458 aa13.42□□□□□ -0.26
SQSTM1-202ENST00000389805 SRSF2Q01130 221 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 ZFAND6Q6FIF0 208 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 BAALCQ8WXS3 180 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 HIF1ANQ9NWT6 349 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 TRAV12-1A0A0B4J245 112 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 A8MWV9 139 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 ZNF688P0C7X2 276 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 UBE2D3P61077 147 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 UBE2D2P62837 147 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 TEX29Q8N6K0 151 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 SCGB2A1O75556 95 aa13.41□□□□□ -0.26
SQSTM1-202ENST00000389805 TRBV20-1A0A075B6N2 111 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 CD7P09564 240 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 LY6EQ16553 131 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 C2orf66Q6UXQ4 117 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 NDUFA11Q86Y39 141 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 IGHV4-38-2P0DP08 117 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 Q6ZS46 218 aa13.4□□□□□ -0.26
SQSTM1-202ENST00000389805 LINC01619G3V211 115 aa13.39□□□□□ -0.27
SQSTM1-202ENST00000389805 H7C2G1 150 aa13.39□□□□□ -0.27
SQSTM1-202ENST00000389805 TOMM6Q96B49 74 aa13.39□□□□□ -0.27
SQSTM1-202ENST00000389805 RAX2Q96IS3 184 aa13.39□□□□□ -0.27
SQSTM1-202ENST00000389805 IGF1P05019 195 aa13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 MGPP08493 103 aa13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 SUMO2P61956 95 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 GAGE5Q13069 117 aa13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 GAGE6Q13070 117 aa13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 C14orf178Q8N769 122 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 USP9YO00507 2555 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 CRIP2P52943 208 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 EEF1AKMT3Q96AZ1 226 aa13.38□□□□□ -0.27
SQSTM1-202ENST00000389805 DOPEY1Q5JWR5 2465 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms