RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 EVI2AP22794 236 aa14.72□□□□□ -0.05
CCDC28B-201ENST00000373602 RHOHQ15669 191 aa14.71□□□□□ -0.05
CCDC28B-201ENST00000373602 PRADC1Q9BSG0 188 aa14.71□□□□□ -0.05
CCDC28B-201ENST00000373602 PCLOQ9Y6V0 5065 aa14.7□□□□□ -0.06
CCDC28B-201ENST00000373602 IGHV3-73A0A0B4J1V6 119 aa14.7□□□□□ -0.06
CCDC28B-201ENST00000373602 ZNF345Q14585 488 aa14.7□□□□□ -0.06
CCDC28B-201ENST00000373602 KCNRGQ8N5I3 272 aa14.7□□□□□ -0.06
CCDC28B-201ENST00000373602 MSRB1Q9NZV6 116 aa14.7□□□□□ -0.06
CCDC28B-201ENST00000373602 S100A4P26447 101 aaKnown RBP14.69□□□□□ -0.06
CCDC28B-201ENST00000373602 PIK3CD-AS1Q5SR53 167 aa14.69□□□□□ -0.06
CCDC28B-201ENST00000373602 COX8CQ7Z4L0 72 aa14.69□□□□□ -0.06
CCDC28B-201ENST00000373602 STOML3Q8TAV4 291 aa14.69□□□□□ -0.06
CCDC28B-201ENST00000373602 ZFP30Q9Y2G7 519 aa14.69□□□□□ -0.06
CCDC28B-201ENST00000373602 MGST1P10620 155 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 ASIPP42127 132 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 FHITP49789 147 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 CRIP1P50238 77 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 ERVFC1-1P60608 527 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 C10orf126Q8N4M7 172 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 TCEAL7Q9BRU2 100 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 KRTAP4-5Q9BYR2 181 aa14.68□□□□□ -0.06
CCDC28B-201ENST00000373602 HMSDA8MTL9 139 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 EREGO14944 169 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 CRYGDP07320 174 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 OR11H4Q8NGC9 324 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 ZC2HC1AQ96GY0 325 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 FMC1Q96HJ9 113 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 PARLQ9H300 379 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 IL36BQ9NZH7 164 aa14.67□□□□□ -0.06
CCDC28B-201ENST00000373602 DNAH5Q8TE73 4624 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 IGHV3-38A0A0C4DH36 116 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 TRBV6-1A0A0K0K1D8 114 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 A8MWV9 139 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 B4DEV8 164 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 SEC11BP0C7V7 166 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 DNLZQ5SXM8 178 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 ZFP2Q6ZN57 461 aa14.66□□□□□ -0.06
CCDC28B-201ENST00000373602 KRBOX1C9JBD0 128 aa14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 SH2D1AO60880 128 aa14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 UBE2G1P62253 170 aa14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 LGALSLQ3ZCW2 172 aaPredicted RBP14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 LINC01556Q5JQF7 62 aa14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 CST9LP1Q5W188 147 aa14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 PGPEP1Q9NXJ5 209 aa14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 APOBP04114 4563 aaKnown RBP14.65□□□□□ -0.06
CCDC28B-201ENST00000373602 A0A087WTM6 91 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 TRAV8-6A0A0B4J262 113 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 A0A0D9SG52 128 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 FAM162BQ5T6X4 162 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 Q6ZSN1 163 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 MAPKAPK5-AS1Q8N8E1 139 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 MBD3L1Q8WWY6 194 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 BOLA1Q9Y3E2 137 aa14.64□□□□□ -0.07
CCDC28B-201ENST00000373602 UMAD1C9J7I0 102 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 H3BVH4 76 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 M0R036 132 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 LTAP01374 205 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 ZNF674Q2M3X9 581 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 OR10J3Q5JRS4 329 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 LELP1Q5T871 98 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 ATP6V0E2Q8NHE4 81 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 GTSF1LQ9H1H1 148 aa14.63□□□□□ -0.07
CCDC28B-201ENST00000373602 PAGE4O60829 102 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 ARMS2P0C7Q2 107 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 AKR1C3P42330 323 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 UFSP1Q6NVU6 142 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 CDPF1Q6NVV7 123 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 FAM213BQ8TBF2 198 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 SFT2D1Q8WV19 159 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 ZNF471Q9BX82 626 aaPredicted RBP14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 JPT2Q9H910 190 aa14.62□□□□□ -0.07
CCDC28B-201ENST00000373602 KANTRA0A1W2PQU2 76 aa14.61□□□□□ -0.07
CCDC28B-201ENST00000373602 BCL2L11O43521 198 aa14.61□□□□□ -0.07
CCDC28B-201ENST00000373602 LINC01559Q495D7 138 aa14.61□□□□□ -0.07
CCDC28B-201ENST00000373602 DMRTA1Q5VZB9 504 aa14.61□□□□□ -0.07
CCDC28B-201ENST00000373602 SAMD10Q9BYL1 202 aa14.61□□□□□ -0.07
CCDC28B-201ENST00000373602 GRIFINA4D1Z8 144 aa14.6□□□□□ -0.07
CCDC28B-201ENST00000373602 IBA57-AS1B1ANH7 110 aa14.6□□□□□ -0.07
CCDC28B-201ENST00000373602 LINC00694P0DN24 101 aa14.6□□□□□ -0.07
CCDC28B-201ENST00000373602 SYT8Q8NBV8 401 aa14.6□□□□□ -0.07
CCDC28B-201ENST00000373602 FUSP35637 526 aaKnown RBP eCLIP14.59□□□□□ -0.07
CCDC28B-201ENST00000373602 SCRT2Q9NQ03 307 aa14.59□□□□□ -0.07
CCDC28B-201ENST00000373602 GAGE12JA6NER3 117 aa14.58□□□□□ -0.08
CCDC28B-201ENST00000373602 GAGE1Q13065 139 aa14.58□□□□□ -0.08
CCDC28B-201ENST00000373602 GAGE4Q13068 117 aa14.58□□□□□ -0.08
CCDC28B-201ENST00000373602 GAGE5Q13069 117 aa14.58□□□□□ -0.08
CCDC28B-201ENST00000373602 GAGE13Q4V321 117 aa14.58□□□□□ -0.08
CCDC28B-201ENST00000373602 Q8N1X5 172 aa14.58□□□□□ -0.08
CCDC28B-201ENST00000373602 TMSB15BA0A087X1C1 80 aa14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 A0A1B0GV50 99 aa14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 RHODO00212 210 aa14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 S100A9P06702 114 aaKnown RBP14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 EIF5AP63241 154 aaKnown RBP14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 C14orf178Q8N769 122 aaPredicted RBP14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 Q9UF83 564 aa14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 PHLDA3Q9Y5J5 127 aa14.57□□□□□ -0.08
CCDC28B-201ENST00000373602 ABCA13Q86UQ4 5058 aa14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 IGHV3-30P01768 117 aa14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 IGHV3-33P01772 117 aa14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 H2AFB1P0C5Y9 115 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms