RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 HLA-DQA1P01909 254 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 SLAQ13239 276 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 GATD1Q8NB37 220 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 CSTL1Q9H114 145 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 MGAM2Q2M2H8 2515 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 SAMD5Q5TGI4 173 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 C9orf85Q96MD7 179 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 TMEM208Q9BTX3 173 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 C1QTNF4Q9BXJ3 329 aa13.53□□□□□ -0.24
CLN3-206ENST00000360019 MUC4Q99102 2169 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 TRGV11A0A075B6L2 103 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 IGHV4-4A0A075B6R2 117 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 IGHV3OR16-12A0A075B7B8 117 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 RAB5BP61020 215 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 SPANXN1Q5VSR9 72 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 TMEM256Q8N2U0 113 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 PHLDA3Q9Y5J5 127 aa13.52□□□□□ -0.25
CLN3-206ENST00000360019 LOC102724200A0A096LPH7 203 aaPredicted RBP13.51□□□□□ -0.25
CLN3-206ENST00000360019 TRGC1P0CF51 173 aa13.51□□□□□ -0.25
CLN3-206ENST00000360019 CACNG7P62955 275 aa13.51□□□□□ -0.25
CLN3-206ENST00000360019 ZNF493Q6ZR52 646 aa13.51□□□□□ -0.25
CLN3-206ENST00000360019 M0R381 172 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 S100A8P05109 93 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 IGHV4-30-4P0DP06 118 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BKO60814 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 APCSP02743 223 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BJP06899 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BOP23527 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BBP33778 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BDP58876 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BCP62807 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST2H2BEQ16778 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BHQ93079 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BNQ99877 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 HIST1H2BMQ99879 126 aa13.5□□□□□ -0.25
CLN3-206ENST00000360019 NBEAL2Q6ZNJ1 2754 aa13.49□□□□□ -0.25
CLN3-206ENST00000360019 NXPH4O95158 308 aa13.49□□□□□ -0.25
CLN3-206ENST00000360019 AZU1P20160 251 aa13.49□□□□□ -0.25
CLN3-206ENST00000360019 KIAA1644Q3SXP7 199 aa13.49□□□□□ -0.25
CLN3-206ENST00000360019 DMRTA1Q5VZB9 504 aa13.49□□□□□ -0.25
CLN3-206ENST00000360019 GOLT1BQ9Y3E0 138 aa13.49□□□□□ -0.25
CLN3-206ENST00000360019 ZNF705AQ6ZN79 300 aaPredicted RBP13.48□□□□□ -0.25
CLN3-206ENST00000360019 C11orf72Q8NBR9 251 aa13.48□□□□□ -0.25
CLN3-206ENST00000360019 TMEM191AQ9H0A3 160 aa13.48□□□□□ -0.25
CLN3-206ENST00000360019 ZMAT5Q9UDW3 170 aaKnown RBP13.48□□□□□ -0.25
CLN3-206ENST00000360019 RIPPLY3P57055 190 aa13.48□□□□□ -0.25
CLN3-206ENST00000360019 KIR2DL5BA0A0G2JN68 375 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 KIR2DL5BA0A0G2JPC4 375 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 EVI2AP22794 236 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 AMN1Q8IY45 258 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 KIR2DL5AQ8N109 375 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 KIR2DL5BQ8NHK3 375 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 GSN-AS1Q9NRJ2 163 aa13.47□□□□□ -0.25
CLN3-206ENST00000360019 ZNF415Q09FC8 603 aa13.46□□□□□ -0.25
CLN3-206ENST00000360019 APOC4P55056 127 aa13.46□□□□□ -0.26
CLN3-206ENST00000360019 FAM104BQ5XKR9 115 aa13.46□□□□□ -0.26
CLN3-206ENST00000360019 RNASE8Q8TDE3 154 aaKnown RBP13.46□□□□□ -0.26
CLN3-206ENST00000360019 RNF185Q96GF1 192 aa13.44□□□□□ -0.26
CLN3-206ENST00000360019 SRIP30626 198 aa13.43□□□□□ -0.26
CLN3-206ENST00000360019 IL17DQ8TAD2 202 aa13.43□□□□□ -0.26
CLN3-206ENST00000360019 TMEM263Q8WUH6 116 aaKnown RBP13.43□□□□□ -0.26
CLN3-206ENST00000360019 RCHY1Q96PM5 261 aa13.43□□□□□ -0.26
CLN3-206ENST00000360019 JPT2Q9H910 190 aa13.43□□□□□ -0.26
CLN3-206ENST00000360019 ZNF876PQ49A33 203 aa13.43□□□□□ -0.26
CLN3-206ENST00000360019 AP1S3Q96PC3 154 aa13.43□□□□□ -0.26
CLN3-206ENST00000360019 A8MZ25 164 aa13.42□□□□□ -0.26
CLN3-206ENST00000360019 RAB4AP20338 218 aa13.42□□□□□ -0.26
CLN3-206ENST00000360019 MRPL51Q4U2R6 128 aaKnown RBP13.42□□□□□ -0.26
CLN3-206ENST00000360019 SMIM15Q7Z3B0 74 aa13.42□□□□□ -0.26
CLN3-206ENST00000360019 C14orf178Q8N769 122 aaPredicted RBP13.42□□□□□ -0.26
CLN3-206ENST00000360019 SYT8Q8NBV8 401 aa13.42□□□□□ -0.26
CLN3-206ENST00000360019 PLAC8L1A1L4L8 177 aa13.41□□□□□ -0.26
CLN3-206ENST00000360019 M0R2P5 195 aa13.41□□□□□ -0.26
CLN3-206ENST00000360019 DEFB135Q30KP9 77 aa13.41□□□□□ -0.26
CLN3-206ENST00000360019 ALKBH7Q9BT30 221 aaPredicted RBP13.41□□□□□ -0.26
CLN3-206ENST00000360019 RRN3P1Q2M238 152 aa13.41□□□□□ -0.26
CLN3-206ENST00000360019 KIF25-AS1Q9Y6Z4 181 aa13.41□□□□□ -0.26
CLN3-206ENST00000360019 NDUFA6P56556 154 aa13.4□□□□□ -0.26
CLN3-206ENST00000360019 C16orf74Q96GX8 76 aa13.4□□□□□ -0.26
CLN3-206ENST00000360019 SPXQ9BT56 116 aa13.4□□□□□ -0.26
CLN3-206ENST00000360019 X6R8D5 127 aa13.4□□□□□ -0.26
CLN3-206ENST00000360019 HUWE1Q7Z6Z7 4374 aaKnown RBP13.39□□□□□ -0.27
CLN3-206ENST00000360019 D6R8Y8 96 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 DPH3P1Q9H4G8 78 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 SMKR1H3BMG3 65 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 UBE2CO00762 179 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 S100A6P06703 90 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 LINC00315P59091 139 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 KPRPQ5T749 579 aaPredicted RBP13.39□□□□□ -0.27
CLN3-206ENST00000360019 PTH2Q96A98 100 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 SAMD10Q9BYL1 202 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 U3KQK5 164 aa13.39□□□□□ -0.27
CLN3-206ENST00000360019 A0A087WWL8 130 aa13.38□□□□□ -0.27
CLN3-206ENST00000360019 GAS8-AS1O95177 125 aa13.38□□□□□ -0.27
CLN3-206ENST00000360019 MRPL16Q9NX20 251 aaKnown RBP13.38□□□□□ -0.27
CLN3-206ENST00000360019 NCR2O95944 276 aa13.37□□□□□ -0.27
CLN3-206ENST00000360019 PRB2P02812 416 aaPredicted RBP13.37□□□□□ -0.27
CLN3-206ENST00000360019 SNRPEP62304 92 aaKnown RBP13.37□□□□□ -0.27
CLN3-206ENST00000360019 PIK3CD-AS1Q5SR53 167 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms