RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 IGHV3OR16-12A0A075B7B8 117 aa14.46□□□□□ -0.1
CLN3-205ENST00000359984 HTN1P15515 57 aa14.46□□□□□ -0.1
CLN3-205ENST00000359984 ASIPP42127 132 aa14.46□□□□□ -0.1
CLN3-205ENST00000359984 APOC4P55056 127 aa14.46□□□□□ -0.1
CLN3-205ENST00000359984 DNLZQ5SXM8 178 aa14.46□□□□□ -0.1
CLN3-205ENST00000359984 LINC00467Q9BRT7 94 aa14.46□□□□□ -0.1
CLN3-205ENST00000359984 CBY3A6NI87 242 aa14.45□□□□□ -0.1
CLN3-205ENST00000359984 A8MZ25 164 aa14.45□□□□□ -0.1
CLN3-205ENST00000359984 PRB2P02812 416 aaPredicted RBP14.45□□□□□ -0.1
CLN3-205ENST00000359984 BTF3P20290 206 aaKnown RBP14.45□□□□□ -0.1
CLN3-205ENST00000359984 GOLT1BQ9Y3E0 138 aa14.45□□□□□ -0.1
CLN3-205ENST00000359984 IGHV3-16A0A0C4DH30 117 aa14.44□□□□□ -0.1
CLN3-205ENST00000359984 H3BVH4 76 aa14.44□□□□□ -0.1
CLN3-205ENST00000359984 RNASE3P12724 160 aaKnown RBP14.44□□□□□ -0.1
CLN3-205ENST00000359984 S100A4P26447 101 aaKnown RBP14.44□□□□□ -0.1
CLN3-205ENST00000359984 CTRLP40313 264 aa14.44□□□□□ -0.1
CLN3-205ENST00000359984 GNB1LQ9BYB4 327 aa14.44□□□□□ -0.1
CLN3-205ENST00000359984 MDFICQ9P1T7 246 aa14.44□□□□□ -0.1
CLN3-205ENST00000359984 ARMS2P0C7Q2 107 aa14.44□□□□□ -0.1
CLN3-205ENST00000359984 MRPL54Q6P161 138 aaKnown RBP14.44□□□□□ -0.1
CLN3-205ENST00000359984 SSBP4Q9BWG4 385 aaPredicted RBP14.44□□□□□ -0.1
CLN3-205ENST00000359984 MUC21A0A0G2JKD1 596 aa14.43□□□□□ -0.1
CLN3-205ENST00000359984 MUC21A0A140T8X8 626 aa14.43□□□□□ -0.1
CLN3-205ENST00000359984 TIMM8BQ9Y5J9 83 aaPredicted RBP14.43□□□□□ -0.1
CLN3-205ENST00000359984 DNHD1Q96M86 4753 aa14.43□□□□□ -0.1
CLN3-205ENST00000359984 TRGV11A0A075B6L2 103 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 F2Z2F3 143 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 SNAI2O43623 268 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 OR5AL1P0C617 328 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 PDZD11Q5EBL8 140 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 ZNF705AQ6ZN79 300 aaPredicted RBP14.42□□□□□ -0.1
CLN3-205ENST00000359984 A0A1B0GUT8 65 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 SPRY2O43597 315 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 SSTP61278 116 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 COX19Q49B96 90 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 TMEM136Q6ZRR5 245 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 MRPL18Q9H0U6 180 aaKnown RBP14.42□□□□□ -0.1
CLN3-205ENST00000359984 SCRT2Q9NQ03 307 aa14.42□□□□□ -0.1
CLN3-205ENST00000359984 SNURFLB1AK76 121 aa14.41□□□□□ -0.1
CLN3-205ENST00000359984 MED14OSP0DP75 135 aa14.41□□□□□ -0.1
CLN3-205ENST00000359984 AZU1P20160 251 aa14.41□□□□□ -0.1
CLN3-205ENST00000359984 HIST1H2BLQ99880 126 aa14.41□□□□□ -0.1
CLN3-205ENST00000359984 S100A2P29034 98 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 WDR73Q6P4I2 378 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 OR10AG1Q8NH19 301 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 A0A1B0GXF2 115 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 MT-ND6P03923 174 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 BORCS7Q96B45 105 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 C9orf85Q96MD7 179 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 CNFNQ9BYD5 112 aa14.4□□□□□ -0.1
CLN3-205ENST00000359984 RIGQ13278 110 aa14.39□□□□□ -0.11
CLN3-205ENST00000359984 DEFB135Q30KP9 77 aa14.39□□□□□ -0.11
CLN3-205ENST00000359984 RASL11AQ6T310 242 aa14.39□□□□□ -0.11
CLN3-205ENST00000359984 ATP5L2Q7Z4Y8 100 aa14.39□□□□□ -0.11
CLN3-205ENST00000359984 OR10D4PQ8NGN7 298 aa14.39□□□□□ -0.11
CLN3-205ENST00000359984 K7EIL1 84 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 C11orf72Q8NBR9 251 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 PCP4L1A6NKN8 68 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 FABP4P15090 132 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 NTF3P20783 257 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 PYY3Q5JQD4 70 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 GSN-AS1Q9NRJ2 163 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 MSRB1Q9NZV6 116 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 PHLDA3Q9Y5J5 127 aa14.38□□□□□ -0.11
CLN3-205ENST00000359984 CAMPP49913 170 aa14.37□□□□□ -0.11
CLN3-205ENST00000359984 HBBP68871 147 aa14.37□□□□□ -0.11
CLN3-205ENST00000359984 RNASE8Q8TDE3 154 aaKnown RBP14.37□□□□□ -0.11
CLN3-205ENST00000359984 HLA-DQA1P01909 254 aa14.36□□□□□ -0.11
CLN3-205ENST00000359984 CACNG7P62955 275 aa14.36□□□□□ -0.11
CLN3-205ENST00000359984 ZNF415Q09FC8 603 aa14.36□□□□□ -0.11
CLN3-205ENST00000359984 SPANXN1Q5VSR9 72 aa14.36□□□□□ -0.11
CLN3-205ENST00000359984 Q6ZWC4 215 aa14.36□□□□□ -0.11
CLN3-205ENST00000359984 NBEAL2Q6ZNJ1 2754 aa14.36□□□□□ -0.11
CLN3-205ENST00000359984 IGHV4-4A0A075B6R2 117 aa14.35□□□□□ -0.11
CLN3-205ENST00000359984 M0R381 172 aa14.35□□□□□ -0.11
CLN3-205ENST00000359984 TWIST1Q15672 202 aa14.35□□□□□ -0.11
CLN3-205ENST00000359984 RRN3P1Q2M238 152 aa14.35□□□□□ -0.11
CLN3-205ENST00000359984 TMEM263Q8WUH6 116 aaKnown RBP14.35□□□□□ -0.11
CLN3-205ENST00000359984 RCHY1Q96PM5 261 aa14.35□□□□□ -0.11
CLN3-205ENST00000359984 X6R8D5 127 aa14.35□□□□□ -0.11
CLN3-205ENST00000359984 PACRGQ96M98 296 aaPredicted RBP14.35□□□□□ -0.11
CLN3-205ENST00000359984 A0A1B0GW15 77 aa14.34□□□□□ -0.11
CLN3-205ENST00000359984 DMRTA1Q5VZB9 504 aa14.34□□□□□ -0.11
CLN3-205ENST00000359984 RNF183Q96D59 192 aa14.34□□□□□ -0.11
CLN3-205ENST00000359984 MUC4Q99102 2169 aa14.34□□□□□ -0.11
CLN3-205ENST00000359984 NXPH4O95158 308 aa14.33□□□□□ -0.11
CLN3-205ENST00000359984 RAB4BP61018 213 aa14.33□□□□□ -0.11
CLN3-205ENST00000359984 Q0VG73 95 aa14.33□□□□□ -0.11
CLN3-205ENST00000359984 ZNF493Q6ZR52 646 aa14.33□□□□□ -0.11
CLN3-205ENST00000359984 NUPR1O60356 82 aa14.33□□□□□ -0.12
CLN3-205ENST00000359984 LINC00310P59036 64 aa14.33□□□□□ -0.12
CLN3-205ENST00000359984 OR11H2Q8NH07 326 aa14.33□□□□□ -0.12
CLN3-205ENST00000359984 C16orf74Q96GX8 76 aa14.33□□□□□ -0.12
CLN3-205ENST00000359984 NIT2Q9NQR4 276 aa14.33□□□□□ -0.12
CLN3-205ENST00000359984 PLAC8L1A1L4L8 177 aa14.32□□□□□ -0.12
CLN3-205ENST00000359984 IL17DQ8TAD2 202 aa14.32□□□□□ -0.12
CLN3-205ENST00000359984 SMIM9A6NGZ8 99 aa14.31□□□□□ -0.12
CLN3-205ENST00000359984 ESDP10768 282 aa14.31□□□□□ -0.12
CLN3-205ENST00000359984 DEFB121Q5J5C9 76 aa14.31□□□□□ -0.12
CLN3-205ENST00000359984 SPXQ9BT56 116 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms