RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 CBY3A6NI87 242 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 OXLD1Q5BKU9 147 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 SPANXN1Q5VSR9 72 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 ZNF493Q6ZR52 646 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 LINC01587Q99440 93 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 MDFIQ99750 246 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 MSRB1Q9NZV6 116 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 PHLDA3Q9Y5J5 127 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 KIAA1644Q3SXP7 199 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 LINC00467Q9BRT7 94 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 MUC4Q99102 2169 aa13.63□□□□□ -0.23
CLN3-204ENST00000357857 GIG44P09565 113 aaPredicted RBP13.63□□□□□ -0.23
CLN3-204ENST00000357857 TMEM256Q8N2U0 113 aa13.63□□□□□ -0.23
CLN3-204ENST00000357857 C1QTNF4Q9BXJ3 329 aa13.63□□□□□ -0.23
CLN3-204ENST00000357857 MDFICQ9P1T7 246 aa13.63□□□□□ -0.23
CLN3-204ENST00000357857 SPRY2O43597 315 aa13.62□□□□□ -0.23
CLN3-204ENST00000357857 S100A6P06703 90 aa13.62□□□□□ -0.23
CLN3-204ENST00000357857 HTN1P15515 57 aa13.62□□□□□ -0.23
CLN3-204ENST00000357857 C1orf158Q8N1D5 194 aa13.62□□□□□ -0.23
CLN3-204ENST00000357857 C9orf85Q96MD7 179 aa13.62□□□□□ -0.23
CLN3-204ENST00000357857 TMEM208Q9BTX3 173 aa13.62□□□□□ -0.23
CLN3-204ENST00000357857 M0R381 172 aa13.61□□□□□ -0.23
CLN3-204ENST00000357857 TMEM191AQ9H0A3 160 aa13.61□□□□□ -0.23
CLN3-204ENST00000357857 LOC102724200A0A096LPH7 203 aaPredicted RBP13.6□□□□□ -0.23
CLN3-204ENST00000357857 NDUFA6P56556 154 aa13.6□□□□□ -0.23
CLN3-204ENST00000357857 GOLT1BQ9Y3E0 138 aa13.6□□□□□ -0.23
CLN3-204ENST00000357857 IGHV3OR16-12A0A075B7B8 117 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 NXPH4O95158 308 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 FAM104BQ5XKR9 115 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 SMIM15Q7Z3B0 74 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 CSTL1Q9H114 145 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 PRM2P04554 102 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 SRIP30626 198 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 EGFEM1PQ0D2K5 195 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 AMN1Q8IY45 258 aa13.59□□□□□ -0.23
CLN3-204ENST00000357857 KRTAP10-11P60412 298 aa13.58□□□□□ -0.24
CLN3-204ENST00000357857 ZNF415Q09FC8 603 aa13.58□□□□□ -0.24
CLN3-204ENST00000357857 DMRTA1Q5VZB9 504 aa13.58□□□□□ -0.24
CLN3-204ENST00000357857 CSNK1G2-AS1Q8NCQ2 148 aa13.58□□□□□ -0.24
CLN3-204ENST00000357857 ZMAT5Q9UDW3 170 aaKnown RBP13.58□□□□□ -0.24
CLN3-204ENST00000357857 EVI2AP22794 236 aa13.57□□□□□ -0.24
CLN3-204ENST00000357857 SNRPEP62304 92 aaKnown RBP13.56□□□□□ -0.24
CLN3-204ENST00000357857 SYT8Q8NBV8 401 aa13.56□□□□□ -0.24
CLN3-204ENST00000357857 ALKBH7Q9BT30 221 aaPredicted RBP13.56□□□□□ -0.24
CLN3-204ENST00000357857 CMYA5Q8N3K9 4069 aa13.56□□□□□ -0.24
CLN3-204ENST00000357857 C5orf52A6NGY3 159 aa13.56□□□□□ -0.24
CLN3-204ENST00000357857 MRPL51Q4U2R6 128 aaKnown RBP13.56□□□□□ -0.24
CLN3-204ENST00000357857 AP1S3Q96PC3 154 aa13.56□□□□□ -0.24
CLN3-204ENST00000357857 C11orf72Q8NBR9 251 aa13.55□□□□□ -0.24
CLN3-204ENST00000357857 RNF185Q96GF1 192 aa13.55□□□□□ -0.24
CLN3-204ENST00000357857 GSN-AS1Q9NRJ2 163 aa13.55□□□□□ -0.24
CLN3-204ENST00000357857 KIR2DL5BA0A0G2JN68 375 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 KIR2DL5BA0A0G2JPC4 375 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 AZU1P20160 251 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 RAB4AP20338 218 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 KIR2DL5AQ8N109 375 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 KIR2DL5BQ8NHK3 375 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 RCHY1Q96PM5 261 aa13.54□□□□□ -0.24
CLN3-204ENST00000357857 G3V4G9 280 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 APOC4P55056 127 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 Q0VG73 95 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 OR10J3Q5JRS4 329 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 COA6Q5JTJ3 125 aaKnown RBP13.53□□□□□ -0.24
CLN3-204ENST00000357857 ZNF705AQ6ZN79 300 aaPredicted RBP13.53□□□□□ -0.24
CLN3-204ENST00000357857 IGHV4-30-4P0DP06 118 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 C14orf178Q8N769 122 aaPredicted RBP13.53□□□□□ -0.24
CLN3-204ENST00000357857 SPXQ9BT56 116 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 DPH3P1Q9H4G8 78 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 U3KQK5 164 aa13.53□□□□□ -0.24
CLN3-204ENST00000357857 ANK2Q01484 3957 aa13.52□□□□□ -0.24
CLN3-204ENST00000357857 LOC105371267A0A1B0GV96 52 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 D6R8Y8 96 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 M0R2P5 195 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 ZNF876PQ49A33 203 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 SAMD5Q5TGI4 173 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 ORMDL3Q8N138 153 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 C18orf32Q8TCD1 76 aa13.52□□□□□ -0.25
CLN3-204ENST00000357857 RNASE8Q8TDE3 154 aaKnown RBP13.52□□□□□ -0.25
CLN3-204ENST00000357857 TMEM263Q8WUH6 116 aaKnown RBP13.52□□□□□ -0.25
CLN3-204ENST00000357857 HOXA5P20719 270 aa13.51□□□□□ -0.25
CLN3-204ENST00000357857 CKS2P33552 79 aa13.51□□□□□ -0.25
CLN3-204ENST00000357857 BAGE3Q86Y29 109 aa13.51□□□□□ -0.25
CLN3-204ENST00000357857 SMIM17P0DL12 118 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 IQCJQ1A5X6 159 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 PTH2Q96A98 100 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 JPT2Q9H910 190 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 SMKR1H3BMG3 65 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 UBE2CO00762 179 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 PPBPP02775 128 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 RRN3P1Q2M238 152 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 IL17DQ8TAD2 202 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 PRELID3AQ96N28 172 aa13.5□□□□□ -0.25
CLN3-204ENST00000357857 NCR2O95944 276 aa13.49□□□□□ -0.25
CLN3-204ENST00000357857 MGPP08493 103 aa13.49□□□□□ -0.25
CLN3-204ENST00000357857 PIK3CD-AS1Q5SR53 167 aa13.49□□□□□ -0.25
CLN3-204ENST00000357857 C16orf74Q96GX8 76 aa13.49□□□□□ -0.25
CLN3-204ENST00000357857 KIF25-AS1Q9Y6Z4 181 aa13.49□□□□□ -0.25
CLN3-204ENST00000357857 PKD1L1Q8TDX9 2849 aa13.48□□□□□ -0.25
CLN3-204ENST00000357857 A0A087WWL8 130 aa13.47□□□□□ -0.25
CLN3-204ENST00000357857 MRAP2Q96G30 205 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms