RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 FMC1Q96HJ9 113 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 ZFP30Q9Y2G7 519 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 WFDC10BQ8IUB3 73 aa12.52□□□□□ -0.41
CLN3-202ENST00000355477 TXNDC17Q9BRA2 123 aa12.52□□□□□ -0.41
CLN3-202ENST00000355477 TNFRSF18Q9Y5U5 241 aa12.52□□□□□ -0.41
CLN3-202ENST00000355477 TRBV6-1A0A0K0K1D8 114 aa12.51□□□□□ -0.41
CLN3-202ENST00000355477 B4DEV8 164 aa12.51□□□□□ -0.41
CLN3-202ENST00000355477 KRBOX1C9JBD0 128 aa12.51□□□□□ -0.41
CLN3-202ENST00000355477 SH2D1AO60880 128 aa12.51□□□□□ -0.41
CLN3-202ENST00000355477 BTF3P20290 206 aaKnown RBP12.51□□□□□ -0.41
CLN3-202ENST00000355477 S100A4P26447 101 aaKnown RBP12.51□□□□□ -0.41
CLN3-202ENST00000355477 UBE2G1P62253 170 aa12.51□□□□□ -0.41
CLN3-202ENST00000355477 Q6ZRN7 208 aaPredicted RBP12.51□□□□□ -0.41
CLN3-202ENST00000355477 TCEAL7Q9BRU2 100 aa12.51□□□□□ -0.41
CLN3-202ENST00000355477 M0R036 132 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 PFDN1O60925 122 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 LTAP01374 205 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 ASIPP42127 132 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 FAM162BQ5T6X4 162 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 Q6ZSN1 163 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 NHLRC2Q8NBF2 726 aa12.5□□□□□ -0.41
CLN3-202ENST00000355477 TRBV6-4A0A1B0GX49 114 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 CIDEAO60543 219 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 H2AFB1P0C5Y9 115 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 AKR1C3P42330 323 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 EIF5AP63241 154 aaKnown RBP12.49□□□□□ -0.41
CLN3-202ENST00000355477 ZNF674Q2M3X9 581 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 JPT2Q9H910 190 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 IL36BQ9NZH7 164 aa12.49□□□□□ -0.41
CLN3-202ENST00000355477 GRIFINA4D1Z8 144 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 H3BVH4 76 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 TPT1P13693 172 aaKnown RBP12.48□□□□□ -0.41
CLN3-202ENST00000355477 LGALSLQ3ZCW2 172 aaPredicted RBP12.48□□□□□ -0.41
CLN3-202ENST00000355477 DNLZQ5SXM8 178 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 DMRTA1Q5VZB9 504 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 SH2D6Q7Z4S9 175 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 SPATA12Q7Z6I5 190 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 LY96Q9Y6Y9 160 aa12.48□□□□□ -0.41
CLN3-202ENST00000355477 SCO2A0A1W2PP80 73 aa12.47□□□□□ -0.41
CLN3-202ENST00000355477 C16orf90A8MZG2 172 aa12.47□□□□□ -0.41
CLN3-202ENST00000355477 ARMS2P0C7Q2 107 aa12.47□□□□□ -0.41
CLN3-202ENST00000355477 RHOHQ15669 191 aa12.47□□□□□ -0.41
CLN3-202ENST00000355477 PRADC1Q9BSG0 188 aa12.47□□□□□ -0.41
CLN3-202ENST00000355477 PARLQ9H300 379 aa12.47□□□□□ -0.41
CLN3-202ENST00000355477 LRP1BQ9NZR2 4599 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 TMSB15BA0A087X1C1 80 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 A8MWV9 139 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 DNAH10OSP0CZ25 163 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 MGST1P10620 155 aaKnown RBP12.46□□□□□ -0.41
CLN3-202ENST00000355477 TIRAPP58753 221 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 KRTAP10-2P60368 255 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 CCL20P78556 96 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 PIK3CD-AS1Q5SR53 167 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 UFSP1Q6NVU6 142 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 TCTE3Q8IZS6 198 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 SAMD10Q9BYL1 202 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 KRTAP17-1Q9BYP8 105 aa12.46□□□□□ -0.41
CLN3-202ENST00000355477 TRAV9-2A0A087WT02 112 aa12.45□□□□□ -0.42
CLN3-202ENST00000355477 LINC01559Q495D7 138 aa12.45□□□□□ -0.42
CLN3-202ENST00000355477 ZFP2Q6ZN57 461 aa12.45□□□□□ -0.42
CLN3-202ENST00000355477 Q9UF83 564 aa12.45□□□□□ -0.42
CLN3-202ENST00000355477 EVI2AP22794 236 aa12.44□□□□□ -0.42
CLN3-202ENST00000355477 Q6ZNX1 250 aa12.44□□□□□ -0.42
CLN3-202ENST00000355477 MLST8Q9BVC4 326 aa12.44□□□□□ -0.42
CLN3-202ENST00000355477 SCRT2Q9NQ03 307 aa12.44□□□□□ -0.42
CLN3-202ENST00000355477 DNAH5Q8TE73 4624 aa12.43□□□□□ -0.42
CLN3-202ENST00000355477 S100A9P06702 114 aaKnown RBP12.43□□□□□ -0.42
CLN3-202ENST00000355477 RYR1P21817 5038 aa12.43□□□□□ -0.42
CLN3-202ENST00000355477 TRAV1-1A0A0B4J248 108 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 IGHV3-38A0A0C4DH36 116 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 K7EP13 123 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 CRYGDP07320 174 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 BAGE2Q86Y30 109 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 C14orf178Q8N769 122 aaPredicted RBP12.42□□□□□ -0.42
CLN3-202ENST00000355477 SYT8Q8NBV8 401 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 ATP6V0E2Q8NHE4 81 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 MSRB1Q9NZV6 116 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 GNG13Q9P2W3 67 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 PHLDA3Q9Y5J5 127 aa12.42□□□□□ -0.42
CLN3-202ENST00000355477 HSPG2P98160 4391 aa12.41□□□□□ -0.42
CLN3-202ENST00000355477 RAB5CP51148 216 aa12.41□□□□□ -0.42
CLN3-202ENST00000355477 RPL19P84098 196 aaKnown RBP12.41□□□□□ -0.42
CLN3-202ENST00000355477 NFE4Q86UQ8 179 aa12.41□□□□□ -0.42
CLN3-202ENST00000355477 GTSF1LQ9H1H1 148 aa12.41□□□□□ -0.42
CLN3-202ENST00000355477 GAGE12JA6NER3 117 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 M0R381 172 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 C1QBP02746 253 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 LINC00694P0DN24 101 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 SULT1A2P50226 295 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 GAGE1Q13065 139 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 GAGE4Q13068 117 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 GAGE5Q13069 117 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 GAGE13Q4V321 117 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 OR10J3Q5JRS4 329 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 SFRP2Q96HF1 295 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 DERL1Q9BUN8 251 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 MANBALQ9NQG1 85 aa12.4□□□□□ -0.42
CLN3-202ENST00000355477 A0A087WWL8 130 aa12.39□□□□□ -0.43
CLN3-202ENST00000355477 TRAV8-6A0A0B4J262 113 aa12.39□□□□□ -0.43
CLN3-202ENST00000355477 FUSP35637 526 aaKnown RBP eCLIP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms