RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 SUMO2P61956 95 aaKnown RBP13.14□□□□□ -0.31
COL9A1-201ENST00000320755 C9orf118A6NHY6 69 aa13.14□□□□□ -0.31
COL9A1-201ENST00000320755 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.14□□□□□ -0.31
COL9A1-201ENST00000320755 PCP4P48539 62 aa13.14□□□□□ -0.31
COL9A1-201ENST00000320755 SCGB3A1Q96QR1 104 aa13.14□□□□□ -0.31
COL9A1-201ENST00000320755 ATP6V0BQ99437 205 aa13.14□□□□□ -0.31
COL9A1-201ENST00000320755 MUC4Q99102 2169 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 H3BRM9 83 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 SIVA1O15304 175 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 FXYD2P54710 66 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 ZNF462Q96JM2 2506 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 TRBV25-1A0A075B6N4 114 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 K7ERJ3 54 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 IGHV4-59P01825 116 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 MRAP2Q96G30 205 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 CHAC1Q9BUX1 264 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 DPH3P1Q9H4G8 78 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 JPT2Q9H910 190 aa13.13□□□□□ -0.31
COL9A1-201ENST00000320755 MAPKAPK5-AS1Q8N8E1 139 aa13.12□□□□□ -0.31
COL9A1-201ENST00000320755 SMPXQ9UHP9 88 aa13.12□□□□□ -0.31
COL9A1-201ENST00000320755 TRAV12-3A0A0B4J271 114 aa13.11□□□□□ -0.31
COL9A1-201ENST00000320755 RNASE3P12724 160 aaKnown RBP13.11□□□□□ -0.31
COL9A1-201ENST00000320755 A0A087WX48 190 aa13.11□□□□□ -0.31
COL9A1-201ENST00000320755 NDUFS8O00217 210 aa13.11□□□□□ -0.31
COL9A1-201ENST00000320755 ZNF688P0C7X2 276 aa13.11□□□□□ -0.31
COL9A1-201ENST00000320755 IGLV1-40P01703 118 aa13.1□□□□□ -0.31
COL9A1-201ENST00000320755 A0A087WWL8 130 aa13.1□□□□□ -0.31
COL9A1-201ENST00000320755 B4DSR2 109 aa13.1□□□□□ -0.31
COL9A1-201ENST00000320755 F5H697 171 aa13.1□□□□□ -0.31
COL9A1-201ENST00000320755 MXRA5Q9NR99 2828 aa13.1□□□□□ -0.31
COL9A1-201ENST00000320755 NAV2Q8IVL1 2488 aa13.1□□□□□ -0.31
COL9A1-201ENST00000320755 DEFB112Q30KQ8 113 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 OCIAD2Q56VL3 154 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 FAM159AQ6UWV7 190 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 DUX5Q96PT3 197 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 NHP2Q9NX24 153 aaKnown RBP13.09□□□□□ -0.31
COL9A1-201ENST00000320755 H3BUA1 57 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 TRAV12-2A0A075B6T6 113 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 CD7P09564 240 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 SMIM13P0DJ93 91 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 GTF2H5Q6ZYL4 71 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 VPS25Q9BRG1 176 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 CSTL1Q9H114 145 aa13.09□□□□□ -0.31
COL9A1-201ENST00000320755 PRSS47A8MTI9 375 aa13.08□□□□□ -0.32
COL9A1-201ENST00000320755 PSMG4Q5JS54 123 aa13.08□□□□□ -0.32
COL9A1-201ENST00000320755 ORMDL2Q53FV1 153 aa13.08□□□□□ -0.32
COL9A1-201ENST00000320755 C2orf66Q6UXQ4 117 aa13.08□□□□□ -0.32
COL9A1-201ENST00000320755 FAM74A4Q5TZK3 123 aa13.07□□□□□ -0.32
COL9A1-201ENST00000320755 CHTOPQ9Y3Y2 248 aaKnown RBP13.07□□□□□ -0.32
COL9A1-201ENST00000320755 EMP1P54849 157 aa13.07□□□□□ -0.32
COL9A1-201ENST00000320755 SPCS1Q9Y6A9 102 aa13.07□□□□□ -0.32
COL9A1-201ENST00000320755 H7C1H1 209 aa13.06□□□□□ -0.32
COL9A1-201ENST00000320755 TGFAP01135 160 aa13.06□□□□□ -0.32
COL9A1-201ENST00000320755 ID1P41134 155 aa13.06□□□□□ -0.32
COL9A1-201ENST00000320755 FAM19A4Q96LR4 140 aa13.06□□□□□ -0.32
COL9A1-201ENST00000320755 SONP18583 2426 aaKnown RBP13.06□□□□□ -0.32
COL9A1-201ENST00000320755 SAP30O75446 220 aa13.06□□□□□ -0.32
COL9A1-201ENST00000320755 NOTCH3Q9UM47 2321 aa13.06□□□□□ -0.32
COL9A1-201ENST00000320755 F8VRH5 84 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 SAMD5Q5TGI4 173 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 TEX15Q9BXT5 2789 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 A0A1W2PPM0 123 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 PLNP26678 52 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 DCANP1Q8TF63 244 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 C20orf78Q9BR46 151 aa13.05□□□□□ -0.32
COL9A1-201ENST00000320755 SETD2Q9BYW2 2564 aaPredicted RBP13.05□□□□□ -0.32
COL9A1-201ENST00000320755 CDKN1BP46527 198 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 TOMM6Q96B49 74 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 HIST1H4GQ99525 98 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 K7EP34 96 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 SYNJ2BPP57105 145 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 HIGD1BQ9P298 99 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 FABP2P12104 132 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 UFSP1Q6NVU6 142 aa13.04□□□□□ -0.32
COL9A1-201ENST00000320755 RNF223E7ERA6 249 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 DUSP14O95147 198 aaKnown RBP13.03□□□□□ -0.32
COL9A1-201ENST00000320755 CFHR3Q02985 330 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 CEND1Q8N111 149 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 FBN2P35556 2912 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 PRSS29PA6NIE9 313 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 OR11H12B2RN74 326 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 PSMB8P28062 276 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 OR11H1Q8NG94 326 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 OR11H2Q8NH07 326 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 BAALCQ8WXS3 180 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 CUBNO60494 3623 aa13.03□□□□□ -0.32
COL9A1-201ENST00000320755 HTN1P15515 57 aa13.02□□□□□ -0.32
COL9A1-201ENST00000320755 KLLNB2CW77 178 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 PRB1P04280 392 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 HLA-DRB4P13762 266 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 NEXN-AS1Q8NBZ9 246 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 MDFICQ9P1T7 246 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 HLA-DRB4X5D2U9 266 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 RPL39P62891 51 aaKnown RBP13.02□□□□□ -0.33
COL9A1-201ENST00000320755 SPINK13Q1W4C9 94 aa13.02□□□□□ -0.33
COL9A1-201ENST00000320755 BRI3O95415 125 aa13.01□□□□□ -0.33
COL9A1-201ENST00000320755 SCGB2A2Q13296 93 aa13.01□□□□□ -0.33
COL9A1-201ENST00000320755 SUMO4Q6EEV6 95 aa13.01□□□□□ -0.33
COL9A1-201ENST00000320755 ZNF256Q9Y2P7 627 aaPredicted RBP13.01□□□□□ -0.33
COL9A1-201ENST00000320755 CD300EQ496F6 205 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms