RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 CACNA1BQ00975 2339 aa14.41□□□□□ -0.1
RTN4-201ENST00000317610 TRBV12-3P01733 135 aa14.41□□□□□ -0.1
RTN4-201ENST00000317610 IGHV1-69DA0A0B4J2H0 117 aa14.4□□□□□ -0.1
RTN4-201ENST00000317610 ZNF815PA8K554 130 aa14.4□□□□□ -0.1
RTN4-201ENST00000317610 UBE2D1P51668 147 aa14.4□□□□□ -0.1
RTN4-201ENST00000317610 KIF25-AS1Q9Y6Z4 181 aa14.4□□□□□ -0.1
RTN4-201ENST00000317610 MED13LQ71F56 2210 aa14.4□□□□□ -0.1
RTN4-201ENST00000317610 TMEM238LA0A1B0GVL6 79 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 A6NJY4 79 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 BRI3O95415 125 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 CRYGDP07320 174 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 DEFB1P60022 68 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 BPESC1Q9GZL8 116 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 LINC00527Q9UJ94 153 aa14.4□□□□□ -0.11
RTN4-201ENST00000317610 IGHV4OR15-8A0A075B7B6 117 aa14.39□□□□□ -0.11
RTN4-201ENST00000317610 A0A087WW49 117 aa14.39□□□□□ -0.11
RTN4-201ENST00000317610 GNRH2O43555 120 aa14.39□□□□□ -0.11
RTN4-201ENST00000317610 RNASE4P34096 147 aaKnown RBP14.39□□□□□ -0.11
RTN4-201ENST00000317610 LINC00315P59091 139 aa14.39□□□□□ -0.11
RTN4-201ENST00000317610 SPTBN2O15020 2390 aa14.39□□□□□ -0.11
RTN4-201ENST00000317610 LINC01549A6NIU2 74 aa14.38□□□□□ -0.11
RTN4-201ENST00000317610 PGPEP1Q9NXJ5 209 aa14.38□□□□□ -0.11
RTN4-201ENST00000317610 PLEKHB2Q96CS7 222 aa14.38□□□□□ -0.11
RTN4-201ENST00000317610 IGLV4-69A0A075B6H9 119 aa14.37□□□□□ -0.11
RTN4-201ENST00000317610 DUSP14O95147 198 aaKnown RBP14.37□□□□□ -0.11
RTN4-201ENST00000317610 TSHBP01222 138 aa14.37□□□□□ -0.11
RTN4-201ENST00000317610 SCGB2A2Q13296 93 aa14.37□□□□□ -0.11
RTN4-201ENST00000317610 PTPRZ1P23471 2315 aaPredicted RBP14.37□□□□□ -0.11
RTN4-201ENST00000317610 IGIPA6NJ69 53 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 PAPPA-AS1Q5QFB9 102 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 UBTD1Q9HAC8 227 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 RELNP78509 3460 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 F6UB75 175 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 H3BUA1 57 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 SMAGPQ0VAQ4 97 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 MTURNQ8N3F0 131 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 ATP6V0E2Q8NHE4 81 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 USMG5Q96IX5 58 aa14.36□□□□□ -0.11
RTN4-201ENST00000317610 MRPL16Q9NX20 251 aaKnown RBP14.36□□□□□ -0.11
RTN4-201ENST00000317610 MUC4Q99102 2169 aa14.35□□□□□ -0.11
RTN4-201ENST00000317610 C11orf86A6NJI1 115 aa14.35□□□□□ -0.11
RTN4-201ENST00000317610 CIDEAO60543 219 aa14.35□□□□□ -0.11
RTN4-201ENST00000317610 POLR2KP53803 58 aaKnown RBP14.35□□□□□ -0.11
RTN4-201ENST00000317610 CFAP126Q5VTH2 177 aa14.35□□□□□ -0.11
RTN4-201ENST00000317610 SCGB1D4Q6XE38 83 aa14.35□□□□□ -0.11
RTN4-201ENST00000317610 CD7P09564 240 aa14.35□□□□□ -0.11
RTN4-201ENST00000317610 DLX4Q92988 240 aaPredicted RBP14.35□□□□□ -0.11
RTN4-201ENST00000317610 SPTA1P02549 2419 aa14.34□□□□□ -0.11
RTN4-201ENST00000317610 KLLNB2CW77 178 aa14.33□□□□□ -0.11
RTN4-201ENST00000317610 NDUFS8O00217 210 aa14.33□□□□□ -0.11
RTN4-201ENST00000317610 TSPAN13O95857 204 aa14.33□□□□□ -0.11
RTN4-201ENST00000317610 INSL3P51460 131 aa14.33□□□□□ -0.11
RTN4-201ENST00000317610 ZFP2Q6ZN57 461 aa14.33□□□□□ -0.11
RTN4-201ENST00000317610 TP53TG1Q9Y2A0 90 aa14.33□□□□□ -0.11
RTN4-201ENST00000317610 IGHV1-69P01742 117 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 SMCPP49901 116 aaPredicted RBP14.33□□□□□ -0.12
RTN4-201ENST00000317610 UBE2D3P61077 147 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 HERVK_113P61574 105 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 UBE2D2P62837 147 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 SRSF9Q13242 221 aaKnown RBP eCLIP14.33□□□□□ -0.12
RTN4-201ENST00000317610 PMVKQ15126 192 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 LCNL1Q6ZST4 164 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 KLHL30-AS1Q8NEE0 82 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 TMEM141Q96I45 108 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 CEP295Q9C0D2 2601 aa14.33□□□□□ -0.12
RTN4-201ENST00000317610 A0A0J9YY99 117 aa14.32□□□□□ -0.12
RTN4-201ENST00000317610 TIMM17AQ99595 171 aa14.32□□□□□ -0.12
RTN4-201ENST00000317610 C1QTNF4Q9BXJ3 329 aa14.32□□□□□ -0.12
RTN4-201ENST00000317610 UCNP55089 124 aa14.32□□□□□ -0.12
RTN4-201ENST00000317610 APOMO95445 188 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 SUMO4Q6EEV6 95 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 IGHV3OR16-10A0A075B7F0 116 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 VCYO14598 125 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 IGHG2P01859 326 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 RPL11P62913 178 aaKnown RBP14.31□□□□□ -0.12
RTN4-201ENST00000317610 FOXI1Q12951 378 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 RHPN1-AS1Q9BWJ2 59 aa14.31□□□□□ -0.12
RTN4-201ENST00000317610 MUC6Q6W4X9 2439 aa14.3□□□□□ -0.12
RTN4-201ENST00000317610 IGHV3-11P01762 117 aa14.29□□□□□ -0.12
RTN4-201ENST00000317610 NDUFA11Q86Y39 141 aa14.29□□□□□ -0.12
RTN4-201ENST00000317610 SVEP1Q4LDE5 3571 aa14.29□□□□□ -0.12
RTN4-201ENST00000317610 TRBV6-5A0A0K0K1A5 114 aa14.29□□□□□ -0.12
RTN4-201ENST00000317610 LYRM7Q5U5X0 104 aa14.29□□□□□ -0.12
RTN4-201ENST00000317610 KIR2DL4Q99706 377 aa14.29□□□□□ -0.12
RTN4-201ENST00000317610 FAM159AQ6UWV7 190 aa14.28□□□□□ -0.12
RTN4-201ENST00000317610 JPT2Q9H910 190 aa14.28□□□□□ -0.12
RTN4-201ENST00000317610 TRBV27A0A0K0K1C4 114 aa14.27□□□□□ -0.12
RTN4-201ENST00000317610 LGALS9O00182 355 aa14.27□□□□□ -0.12
RTN4-201ENST00000317610 TSPEAR-AS2P59090 65 aa14.27□□□□□ -0.12
RTN4-201ENST00000317610 RPL39P62891 51 aaKnown RBP14.27□□□□□ -0.12
RTN4-201ENST00000317610 ZNF876PQ49A33 203 aa14.27□□□□□ -0.12
RTN4-201ENST00000317610 BRD3OSQ6XYD6 125 aa14.27□□□□□ -0.12
RTN4-201ENST00000317610 DAZ1Q9NQZ3 744 aaKnown RBP14.27□□□□□ -0.12
RTN4-201ENST00000317610 NBASA2RRP1 2371 aa14.27□□□□□ -0.13
RTN4-201ENST00000317610 IGKV3-7A0A075B6H7 116 aa14.27□□□□□ -0.13
RTN4-201ENST00000317610 IGHV3-30P01768 117 aa14.27□□□□□ -0.13
RTN4-201ENST00000317610 IGHV3-30-5P0DP03 117 aa14.27□□□□□ -0.13
RTN4-201ENST00000317610 SLC25A29Q8N8R3 303 aa14.27□□□□□ -0.13
RTN4-201ENST00000317610 PSMB2P49721 201 aa14.26□□□□□ -0.13
RTN4-201ENST00000317610 EMP1P54849 157 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms