RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 IFI27L1Q96BM0 104 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 PEMTQ9UBM1 199 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 TRAV12-3A0A0B4J271 114 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 TSPOP30536 169 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 TNP2Q05952 138 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 Q6ZSV7 163 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 OR1N2Q8NGR9 330 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 AP1S3Q96PC3 154 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 PMCHL2Q9BQD1 86 aa9.66□□□□□ -0.86
SPTLC1-201ENST00000262554 IGLV2-18A0A075B6J9 118 aa9.65□□□□□ -0.86
SPTLC1-201ENST00000262554 LCE2BO14633 110 aa9.65□□□□□ -0.86
SPTLC1-201ENST00000262554 LGALS9BQ3B8N2 356 aa9.65□□□□□ -0.86
SPTLC1-201ENST00000262554 LGALS9CQ6DKI2 356 aa9.65□□□□□ -0.86
SPTLC1-201ENST00000262554 ADAMTSL5Q6ZMM2 481 aa9.65□□□□□ -0.86
SPTLC1-201ENST00000262554 FOXI2Q6ZQN5 318 aa9.65□□□□□ -0.86
SPTLC1-201ENST00000262554 SPRY2O43597 315 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 NXPH4O95158 308 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 IGKV3-20P01619 116 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 CDKN1BP46527 198 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 C14orf178Q8N769 122 aaPredicted RBP9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 KLHL30-AS1Q8NEE0 82 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 OR9G4Q8NGQ1 327 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 MRPS16Q9Y3D3 137 aaKnown RBP9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 GOLT1BQ9Y3E0 138 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 ITPR3Q14573 2671 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 CD5LO43866 347 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 CD7P09564 240 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 NUTF2P61970 127 aaKnown RBP9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 BATFQ16520 125 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 FOXC2Q99958 501 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 TENM4Q6N022 2769 aa9.64□□□□□ -0.87
SPTLC1-201ENST00000262554 MGPP08493 103 aa9.63□□□□□ -0.87
SPTLC1-201ENST00000262554 LAGE3Q14657 143 aa9.63□□□□□ -0.87
SPTLC1-201ENST00000262554 TMEM158Q8WZ71 300 aa9.63□□□□□ -0.87
SPTLC1-201ENST00000262554 YAE1D1Q9NRH1 226 aa9.63□□□□□ -0.87
SPTLC1-201ENST00000262554 TRAV12-2A0A075B6T6 113 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 TRAV2A0A0B4J234 112 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 C18orf15Q96N68 181 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 DUX3Q96PT4 197 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 PPP1R17O96001 155 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 SMIM17P0DL12 118 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 SPINK13Q1W4C9 94 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 SLC25A34Q6PIV7 304 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 C20orf78Q9BR46 151 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 SMIM2Q9BVW6 85 aa9.62□□□□□ -0.87
SPTLC1-201ENST00000262554 MUC4Q99102 2169 aa9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 SUMO2P61956 95 aaKnown RBP9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 KRTAP1-1Q07627 177 aa9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 DYNLRB2Q8TF09 96 aa9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 RASL10AQ92737 203 aa9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 DLX4Q92988 240 aaPredicted RBP9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 ESM1Q9NQ30 184 aa9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 KMT2BQ9UMN6 2715 aaPredicted RBP9.61□□□□□ -0.87
SPTLC1-201ENST00000262554 IGHV3-16A0A0C4DH30 117 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 TCAPO15273 167 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 ATP5LO75964 103 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 SCGB2A2Q13296 93 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 COL5A1-AS1Q5SY13 56 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 AMTNQ6UX39 209 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 POM121L12Q8N7R1 296 aa9.6□□□□□ -0.87
SPTLC1-201ENST00000262554 IGHV1OR15-1A0A075B7D0 117 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 DEFB131AP59861 70 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 TMEM61Q8N0U2 210 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 C9orf85Q96MD7 179 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 AGRNO00468 2067 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 K7EMI3 77 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 NUDT3O95989 172 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 PRSS1P07477 247 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 ORMDL2Q53FV1 153 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 Q8N1Y9 231 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 SYT8Q8NBV8 401 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 RPL39LQ96EH5 51 aaKnown RBP9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 KIF25-AS1Q9Y6Z4 181 aa9.59□□□□□ -0.87
SPTLC1-201ENST00000262554 CHD6Q8TD26 2715 aa9.58□□□□□ -0.88
SPTLC1-201ENST00000262554 KNCNA6PVL3 124 aa9.58□□□□□ -0.88
SPTLC1-201ENST00000262554 HLA-DRB4P13762 266 aa9.58□□□□□ -0.88
SPTLC1-201ENST00000262554 ZMAT5Q9UDW3 170 aaKnown RBP9.58□□□□□ -0.88
SPTLC1-201ENST00000262554 HLA-DRB4X5D2U9 266 aa9.58□□□□□ -0.88
SPTLC1-201ENST00000262554 TRGV11A0A075B6L2 103 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 COX8AP10176 69 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 DEFB114Q30KQ6 69 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 A8MTW9 85 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 HINT1P49773 126 aaPredicted RBP9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 LINC00315P59091 139 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 RAX2Q96IS3 184 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 MDFICQ9P1T7 246 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 DKK2Q9UBU2 259 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 PDZD2O15018 2839 aa9.57□□□□□ -0.88
SPTLC1-201ENST00000262554 FLNAP21333 2647 aaKnown RBP9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 A0A1W2PRX2 142 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 H3BMM0 161 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 RNASE1P07998 156 aaKnown RBP9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 ODF1Q14990 250 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 HIST2H2BDQ6DRA6 164 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 JPT2Q9H910 190 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 TP73-AS1Q9UF72 201 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 TLN2Q9Y4G6 2542 aa9.56□□□□□ -0.88
SPTLC1-201ENST00000262554 A0A087WWL8 130 aa9.55□□□□□ -0.88
SPTLC1-201ENST00000262554 F5H697 171 aa9.55□□□□□ -0.88
SPTLC1-201ENST00000262554 CD28P10747 220 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms