RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 IGLV10-54A0A075B6I4 117 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 TRAV4A0A0B4J268 109 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 CITED2Q99967 270 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-201ENST00000254630 SPRY4Q9C004 299 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 TRAV12-1A0A0B4J245 112 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 MAJINQ3KP22 176 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 C9orf153Q5TBE3 101 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 ZFP2Q6ZN57 461 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 LRRC75A-AS1Q8N1F1 130 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 Q8N1Y9 231 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 PLA2G5P39877 138 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 NDUFA11Q86Y39 141 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 Q8NA96 180 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 IL15RAQ13261 267 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 C12orf74Q32Q52 190 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 PATE2Q6UY27 113 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 GPHB5Q86YW7 130 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 ESM1Q9NQ30 184 aa6.72□□□□□ -1.33
PTCD3-201ENST00000254630 AMTNQ6UX39 209 aa6.71□□□□□ -1.33
PTCD3-201ENST00000254630 LYPD6BQ8NI32 183 aa6.71□□□□□ -1.33
PTCD3-201ENST00000254630 IGLV2-14P01704 120 aa6.71□□□□□ -1.34
PTCD3-201ENST00000254630 MED14OSP0DP75 135 aa6.71□□□□□ -1.34
PTCD3-201ENST00000254630 PRAC2D3DTV9 90 aa6.71□□□□□ -1.34
PTCD3-201ENST00000254630 DEFB135Q30KP9 77 aa6.71□□□□□ -1.34
PTCD3-201ENST00000254630 ZNF747Q9BV97 191 aa6.71□□□□□ -1.34
PTCD3-201ENST00000254630 IGHG2P01859 326 aa6.71□□□□□ -1.34
PTCD3-201ENST00000254630 LINC01545Q5VT33 79 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 TOMM6Q96B49 74 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 RP1P56715 2156 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 DEFB4AO15263 64 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 FBXL19-AS1Q494R0 122 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 IGHV4-31P0DP07 118 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 TRBV7-3A0A075B6L6 115 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 TRBV12-3P01733 135 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 BAALC-AS2P0C853 105 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 SPANXDQ9BXN6 97 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 LOXL1Q08397 574 aaPredicted RBP6.7□□□□□ -1.34
PTCD3-201ENST00000254630 SMAD5-AS1Q9Y6J3 95 aa6.7□□□□□ -1.34
PTCD3-201ENST00000254630 IFITM1P13164 125 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 IGKV1-17P01599 117 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 UBE2AP49459 152 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 C19orf84I3L1E1 186 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 CFC1BP0CG36 223 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 CFC1P0CG37 223 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 TM2D2Q9BX73 214 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 MAP6D1Q9H9H5 199 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 BAALCQ8WXS3 180 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 NDUFA1O15239 70 aa6.69□□□□□ -1.34
PTCD3-201ENST00000254630 ODF3BA8MYP8 253 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 TRACP01848 142 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 TMEM263Q8WUH6 116 aaKnown RBP6.68□□□□□ -1.34
PTCD3-201ENST00000254630 TNRC6BQ9UPQ9 1833 aaKnown RBP6.68□□□□□ -1.34
PTCD3-201ENST00000254630 INSL3P51460 131 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 ANKRD29Q8N6D5 301 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 IGLV1-47P01700 117 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 H3BQ85 93 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 Q6YL49 198 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 IGLL5B9A064 214 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 DEFB125Q8N687 156 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 FAM167A-AS1Q96KT0 104 aa6.68□□□□□ -1.34
PTCD3-201ENST00000254630 TRBV6-1A0A0K0K1D8 114 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 H3BMG7 143 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 HIST2H2BCQ6DN03 193 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 MUSTN1Q8IVN3 82 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 PCP2Q8IVA1 136 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 SND1-IT1Q9HBX3 110 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 MSRB1Q9NZV6 116 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 HEATR1Q9H583 2144 aaKnown RBP6.67□□□□□ -1.34
PTCD3-201ENST00000254630 E7EUB6 86 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 HEATR5AQ86XA9 2040 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 GTSF1Q8WW33 167 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 TNFRSF13BO14836 293 aaPredicted RBP6.67□□□□□ -1.34
PTCD3-201ENST00000254630 UNQ9165/PRO28630Q6UXU0 137 aa6.67□□□□□ -1.34
PTCD3-201ENST00000254630 K7EP13 123 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 RPL39P62891 51 aaKnown RBP6.66□□□□□ -1.34
PTCD3-201ENST00000254630 CEP192Q8TEP8 1941 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 IL17DQ8TAD2 202 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 MUC22E2RYF6 1773 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-201ENST00000254630 WISP2O76076 250 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 FUSP35637 526 aaKnown RBP eCLIP6.66□□□□□ -1.34
PTCD3-201ENST00000254630 MSMPQ1L6U9 139 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 CTRLP40313 264 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 CXCL5P42830 114 aa6.66□□□□□ -1.34
PTCD3-201ENST00000254630 VSIG2Q96IQ7 327 aa6.65□□□□□ -1.34
PTCD3-201ENST00000254630 DEFB1P60022 68 aa6.65□□□□□ -1.34
PTCD3-201ENST00000254630 CCDC140Q96MF4 163 aa6.65□□□□□ -1.34
PTCD3-201ENST00000254630 IGHV4-28A0A0C4DH34 117 aa6.65□□□□□ -1.34
PTCD3-201ENST00000254630 TIMM17AQ99595 171 aa6.65□□□□□ -1.34
PTCD3-201ENST00000254630 A0A0J9YXV3 536 aa6.65□□□□□ -1.35
PTCD3-201ENST00000254630 PROP1O75360 226 aa6.65□□□□□ -1.35
PTCD3-201ENST00000254630 NTN5Q8WTR8 489 aaPredicted RBP6.65□□□□□ -1.35
PTCD3-201ENST00000254630 FANCD2OSQ96PS1 177 aa6.65□□□□□ -1.35
PTCD3-201ENST00000254630 A0A0J9YX75 114 aa6.65□□□□□ -1.35
PTCD3-201ENST00000254630 C11orf86A6NJI1 115 aa6.65□□□□□ -1.35
PTCD3-201ENST00000254630 C11orf45Q8TAV5 145 aa6.65□□□□□ -1.35
PTCD3-201ENST00000254630 CNTRLQ7Z7A1 2325 aa6.64□□□□□ -1.35
PTCD3-201ENST00000254630 DOCK9Q9BZ29 2069 aa6.64□□□□□ -1.35
PTCD3-201ENST00000254630 Q6ZVH6 145 aa6.64□□□□□ -1.35
PTCD3-201ENST00000254630 LINC00173Q6ZV60 143 aa6.64□□□□□ -1.35
PTCD3-201ENST00000254630 MDFICQ9P1T7 246 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms