RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 GAGE2EQ4V326 116 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 C2orf82Q6UX34 121 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 Q71RC1 249 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-201ENST00000249837 GAGE2DQ9UEU5 116 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 HOXB4P17483 251 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-201ENST00000249837 CRIP1P50238 77 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 CEND1Q8N111 149 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 SP5Q6BEB4 398 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-201ENST00000249837 PPDPFLQ8WWR9 84 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 LINC00574Q9H8X3 128 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 K7ENP7 123 aa3.58□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV1-69DA0A0B4J2H0 117 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV1-69P01742 117 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 SPXQ9BT56 116 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV3-38A0A0C4DH36 116 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TCF15Q12870 199 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TIMM21Q9BVV7 248 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TEX29Q8N6K0 151 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 USMG5Q96IX5 58 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TRGV1A0A0A0MS02 117 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TSPAN13O95857 204 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 RNASE13Q5GAN3 156 aaKnown RBP3.57□□□□□ -1.84
VPS13C-201ENST00000249837 GAS8-AS1O95177 125 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 BLCAPP62952 87 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 OR11H6Q8NGC7 330 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TRBV6-1A0A0K0K1D8 114 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 CRYGBP07316 175 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 RPL35AP18077 110 aaKnown RBP3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TRGV11A0A075B6L2 103 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 TRAV8-4A0A0B4J246 113 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 SIVA1O15304 175 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 SDHAF1A6NFY7 115 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 CFHR3Q02985 330 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 ZFAND6Q6FIF0 208 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 MAPKAPK5-AS1Q8N8E1 139 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 HIGD1BQ9P298 99 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 NPBQ8NG41 125 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 PRO1854Q9UHT4 67 aa3.57□□□□□ -1.84
VPS13C-201ENST00000249837 COL4A2P08572 1712 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 MYCNOSP40205 109 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 BUB3O43684 328 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 ZNF625Q96I27 306 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-201ENST00000249837 ANAPC13Q9BS18 74 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 IGKV2D-26A0A0A0MRZ7 120 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 ZNF415Q09FC8 603 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 VWC2LB2RUY7 222 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 NDUFA4O00483 81 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 DEFB131AP59861 70 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 C11orf68Q9H3H3 251 aaKnown RBP3.56□□□□□ -1.84
VPS13C-201ENST00000249837 DNAL4O96015 105 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV4-61A0A0C4DH41 118 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 TMEM238C9JI98 176 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 YAE1D1Q9NRH1 226 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 XCL2Q9UBD3 114 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 M0R2P5 195 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 Q8N9W7 124 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 Q8NA96 180 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 COPS9Q8WXC6 57 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 GAGE12HA6NDE8 117 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 IGF1P05019 195 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 LINC00158P58513 81 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 RASL10AQ92737 203 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 DAZ1Q9NQZ3 744 aaKnown RBP3.56□□□□□ -1.84
VPS13C-201ENST00000249837 TRBV12-3P01733 135 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 PMVKQ15126 192 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 ATXN8Q156A1 80 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 C10orf126Q8N4M7 172 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 GATD1Q8NB37 220 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 BPTFQ12830 3046 aa3.56□□□□□ -1.84
VPS13C-201ENST00000249837 B4DSR2 109 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV1OR15-1A0A075B7D0 117 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 TRAV13-1A0A0B4J241 112 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 IGLV2-11P01706 119 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 TRBV7-9A0A0J9YWB2 115 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 FAM223BA6NKX1 122 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 FAM223AQ8IWN6 122 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 TRGV2A0A075B6R0 118 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-201ENST00000249837 URB1-AS1Q96HZ7 61 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 COL27A1Q8IZC6 1860 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-201ENST00000249837 J3QQQ9 107 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 C16orf54Q6UWD8 224 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 HTN3P15516 51 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 STHQ8IWL8 128 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 LY6G5BQ8NDX9 201 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 C20orf78Q9BR46 151 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 CHCHD5Q9BSY4 110 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV4-38-2P0DP08 117 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 TMEM141Q96I45 108 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 RNF223E7ERA6 249 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 FGF6P10767 208 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 ADORA2A-AS1P86434 159 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 TCTEX1D4Q5JR98 221 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 PEMTQ9UBM1 199 aa3.55□□□□□ -1.84
VPS13C-201ENST00000249837 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-201ENST00000249837 TRAV8-3A0A0A6YYJ7 113 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 IGKV2-29A2NJV5 120 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-201ENST00000249837 SCGB1A1P11684 91 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 JPT2Q9H910 190 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 TRGV4A0A0C4DH28 118 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms