RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 ARHGAP21Q5T5U3 1957 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 TRAV4A0A0B4J268 109 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV1-16P04430 117 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 TMEM14EPQ6UXP3 125 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 SVIPQ8NHG7 77 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 IGFBPL1Q8WX77 278 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 SMAD5-AS1Q9Y6J3 95 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 LINC00473A8K010 186 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 BAALC-AS2P0C853 105 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 MST1P26927 711 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 IL15RAQ13261 267 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 WFDC1Q9HC57 220 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 K7EMI3 77 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 CRYBA4P53673 196 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 FOXE3Q13461 319 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 SPATA25Q9BR10 227 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 C20orf78Q9BR46 151 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 GVINP1Q7Z2Y8 2422 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 CEP192Q8TEP8 1941 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 K7EQD1 137 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 ZNF833PQ6ZTB9 187 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 CEND1Q8N111 149 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 GTSF1Q8WW33 167 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 OPRPNQ99935 248 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-209ENST00000635750 PRB1P04280 392 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 UBE2V1Q13404 147 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 LINC01545Q5VT33 79 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 TRAV26-2A0A0B4J265 109 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 RS1O15537 224 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 MRPL51Q4U2R6 128 aaKnown RBP4.42□□□□□ -1.7
SCN1A-209ENST00000635750 PRR30Q53SZ7 412 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-209ENST00000635750 WIPF2Q8TF74 440 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-209ENST00000635750 HHLA3Q9XRX5 114 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 KIAA1671Q9BY89 1806 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 TMEM213A2RRL7 107 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 AMTNQ6UX39 209 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 MUSTN1Q8IVN3 82 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 J3QQQ9 107 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 C3orf79P0CE67 100 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 UBE2D1P51668 147 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 LINC01620Q4KN68 170 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 ANKRD39Q53RE8 183 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 RNASE13Q5GAN3 156 aaKnown RBP4.42□□□□□ -1.7
SCN1A-209ENST00000635750 HIST2H2BCQ6DN03 193 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 Q8TCH9 128 aa4.42□□□□□ -1.7
SCN1A-209ENST00000635750 IGLV10-54A0A075B6I4 117 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 TRBV19A0A075B6N1 114 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 PRSS47A8MTI9 375 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 F8VRH5 84 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 H0YIZ8 118 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 ACYP1P07311 99 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 C5orf38Q86SI9 138 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 DYNAPQ8N1N2 210 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV1-12A0A0C4DH73 117 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 C15orf62A8K5M9 175 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 Q0VG73 95 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 Q9H8V8 135 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 NDUFA4L2Q9NRX3 87 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 WNK1Q9H4A3 2382 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 SHISA3A0PJX4 238 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 LRCOL1A6NCL2 159 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 A8MWP6 167 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 PRB2P02812 416 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-209ENST00000635750 ZNF493Q6ZR52 646 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 DSCAML1Q8TD84 2053 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 GAGE12HA6NDE8 117 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 HIST3H2BBQ8N257 126 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 C7orf33Q8WU49 177 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 TMEM14CQ9P0S9 112 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV1-27A0A075B6S5 117 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 H0YGX0 51 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 DEFB112Q30KQ8 113 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 PRSS33Q8NF86 280 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV2-29A2NJV5 120 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-209ENST00000635750 LYPD3O95274 346 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 VOPP1Q96AW1 172 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 H3BRN7 92 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 IGFL3Q6UXB1 125 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 PRR25Q96S07 402 aa4.41□□□□□ -1.7
SCN1A-209ENST00000635750 NUP210Q8TEM1 1887 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-209ENST00000635750 HOXB4P17483 251 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-209ENST00000635750 CXCL5P42830 114 aa4.4□□□□□ -1.7
SCN1A-209ENST00000635750 PRR31Q5SQ13 230 aa4.4□□□□□ -1.7
SCN1A-209ENST00000635750 PRR15LQ9BU68 103 aa4.4□□□□□ -1.7
SCN1A-209ENST00000635750 C9orf118A6NHY6 69 aa4.4□□□□□ -1.7
SCN1A-209ENST00000635750 PLXNA3P51805 1871 aa4.4□□□□□ -1.7
SCN1A-209ENST00000635750 DEFB125Q8N687 156 aa4.4□□□□□ -1.7
SCN1A-209ENST00000635750 IGHV4-59P01825 116 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 IGHV2-5P01817 119 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 PSMB8P28062 276 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 SRSF3P84103 164 aaKnown RBP4.4□□□□□ -1.71
SCN1A-209ENST00000635750 FAM120AOSQ5T036 256 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 SMIM27A0A1W2PRY6 76 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 CXCL1P09341 107 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 POU2AF1Q16633 256 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 SMIM20Q8N5G0 67 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 UBE2D4Q9Y2X8 147 aa4.4□□□□□ -1.71
SCN1A-209ENST00000635750 IGKV1D-8A0A087WSZ0 117 aa4.39□□□□□ -1.71
SCN1A-209ENST00000635750 DEFB136Q30KP8 78 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 8822.1 ms