RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GAGE12GP0CL81 117 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 GAGE12IP0CL82 117 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 ALKAL2Q6UX46 152 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 ZNF575Q86XF7 245 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 NDFIP1Q9BT67 221 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 EPPK1P58107 5090 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 IGHV3-16A0A0C4DH30 117 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 GNRH2O43555 120 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 LTAP01374 205 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 TYMSP04818 313 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 PFN1P07737 140 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 PPT1P50897 306 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 TMEM183BQ1AE95 376 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 SMUG1Q53HV7 270 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 SAPCD1Q5SSQ6 148 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 ZC2HC1AQ96GY0 325 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 FMC1Q96HJ9 113 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 FAT2Q9NYQ8 4349 aa13.7□□□□□ -0.22
SHKBP1-221ENST00000599833 HTN3P15516 51 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 HOXA5P20719 270 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 LGALS9CQ6DKI2 356 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 FAM159AQ6UWV7 190 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 TMEM183AQ8IXX5 376 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 LYPD6BQ8NI32 183 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 C11orf52Q96A22 123 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 FAM210BQ96KR6 192 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 MANBALQ9NQG1 85 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 GNG13Q9P2W3 67 aa13.69□□□□□ -0.22
SHKBP1-221ENST00000599833 NACAE9PAV3 2078 aa13.68□□□□□ -0.22
SHKBP1-221ENST00000599833 ATP5G1P05496 136 aa13.68□□□□□ -0.22
SHKBP1-221ENST00000599833 TMEM88Q6PEY1 159 aa13.68□□□□□ -0.22
SHKBP1-221ENST00000599833 MLST8Q9BVC4 326 aa13.68□□□□□ -0.22
SHKBP1-221ENST00000599833 NAGKQ9UJ70 344 aa13.68□□□□□ -0.22
SHKBP1-221ENST00000599833 TRGV11A0A075B6L2 103 aa13.67□□□□□ -0.22
SHKBP1-221ENST00000599833 IGKV3D-20A0A0C4DH25 116 aa13.67□□□□□ -0.22
SHKBP1-221ENST00000599833 ZNF415Q09FC8 603 aa13.67□□□□□ -0.22
SHKBP1-221ENST00000599833 LGALS9BQ3B8N2 356 aa13.67□□□□□ -0.22
SHKBP1-221ENST00000599833 MRPL16Q9NX20 251 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-221ENST00000599833 ZFP30Q9Y2G7 519 aa13.67□□□□□ -0.22
SHKBP1-221ENST00000599833 TRGV1A0A0A0MS02 117 aa13.66□□□□□ -0.22
SHKBP1-221ENST00000599833 AKR1C3P42330 323 aa13.66□□□□□ -0.22
SHKBP1-221ENST00000599833 NDUFAF3Q9BU61 184 aa13.66□□□□□ -0.22
SHKBP1-221ENST00000599833 LY6G6CO95867 125 aa13.65□□□□□ -0.22
SHKBP1-221ENST00000599833 RASL10AQ92737 203 aa13.65□□□□□ -0.22
SHKBP1-221ENST00000599833 DERL1Q9BUN8 251 aa13.65□□□□□ -0.22
SHKBP1-221ENST00000599833 F5H768 121 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 BCL2P10415 239 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 RNASE3P12724 160 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 UBE2G1P62253 170 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 ZNF674Q2M3X9 581 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 POM121L12Q8N7R1 296 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 KCNS1Q96KK3 526 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 C9orf85Q96MD7 179 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 SDF2L1Q9HCN8 221 aa13.64□□□□□ -0.23
SHKBP1-221ENST00000599833 TXNDC17Q9BRA2 123 aa13.63□□□□□ -0.23
SHKBP1-221ENST00000599833 SPXQ9BT56 116 aa13.63□□□□□ -0.23
SHKBP1-221ENST00000599833 HECTD4Q9Y4D8 3996 aa13.63□□□□□ -0.23
SHKBP1-221ENST00000599833 FABP5P3A8MUU1 101 aa13.62□□□□□ -0.23
SHKBP1-221ENST00000599833 SH2D1AO60880 128 aa13.62□□□□□ -0.23
SHKBP1-221ENST00000599833 IGLV2-8P01709 118 aa13.62□□□□□ -0.23
SHKBP1-221ENST00000599833 MEF2BQ02080 365 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-221ENST00000599833 NHLRC2Q8NBF2 726 aa13.62□□□□□ -0.23
SHKBP1-221ENST00000599833 KRBOX1C9JBD0 128 aa13.61□□□□□ -0.23
SHKBP1-221ENST00000599833 TEX46H3BTG2 121 aa13.61□□□□□ -0.23
SHKBP1-221ENST00000599833 S100A9P06702 114 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-221ENST00000599833 RPL35P42766 123 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-221ENST00000599833 VSIG2Q96IQ7 327 aa13.61□□□□□ -0.23
SHKBP1-221ENST00000599833 TRGV2A0A075B6R0 118 aa13.6□□□□□ -0.23
SHKBP1-221ENST00000599833 DNLZQ5SXM8 178 aa13.6□□□□□ -0.23
SHKBP1-221ENST00000599833 TRBV20OR9-2A0A075B6H5 130 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 M0R2P5 195 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 BLOC1S1P78537 153 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 FHL2Q14192 279 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 FAM162BQ5T6X4 162 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 C15orf53Q8NAA6 179 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 VAX2Q9UIW0 290 aa13.59□□□□□ -0.23
SHKBP1-221ENST00000599833 TRAV26-1A0A087WT03 109 aa13.58□□□□□ -0.24
SHKBP1-221ENST00000599833 LINC01559Q495D7 138 aa13.58□□□□□ -0.24
SHKBP1-221ENST00000599833 BAGE2Q86Y30 109 aa13.58□□□□□ -0.24
SHKBP1-221ENST00000599833 PTH2Q96A98 100 aa13.58□□□□□ -0.24
SHKBP1-221ENST00000599833 ZNF479Q96JC4 524 aa13.58□□□□□ -0.24
SHKBP1-221ENST00000599833 H3BNG1 76 aa13.57□□□□□ -0.24
SHKBP1-221ENST00000599833 PDE6DO43924 150 aa13.57□□□□□ -0.24
SHKBP1-221ENST00000599833 IFNA1P01562 189 aa13.57□□□□□ -0.24
SHKBP1-221ENST00000599833 IGHV3-53P01767 116 aa13.57□□□□□ -0.24
SHKBP1-221ENST00000599833 SFTA3P0C7M3 94 aa13.57□□□□□ -0.24
SHKBP1-221ENST00000599833 OR5I1Q13606 314 aa13.57□□□□□ -0.24
SHKBP1-221ENST00000599833 RAB19A4D1S5 217 aa13.56□□□□□ -0.24
SHKBP1-221ENST00000599833 PGPEP1LA6NFU8 196 aa13.56□□□□□ -0.24
SHKBP1-221ENST00000599833 CENPWQ5EE01 88 aa13.56□□□□□ -0.24
SHKBP1-221ENST00000599833 TEX261Q6UWH6 196 aa13.56□□□□□ -0.24
SHKBP1-221ENST00000599833 A0A0J9YY99 117 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 B4DEV8 164 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 M0R036 132 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 P0DMU3 169 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 FAM231AP0DMU4 169 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 FAM231CP0DMU5 169 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 TAGLN2P37802 199 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 ZNF506Q5JVG8 444 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 SCRT2Q9NQ03 307 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms