RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 IGKV2-40A0A087WW87 121 aaPredicted RBP9.35□□□□□ -0.91
SS18-222ENST00000582792 K7EQM0 130 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 IGKV2D-40P01614 121 aaPredicted RBP9.35□□□□□ -0.91
SS18-222ENST00000582792 TCRAP04437 139 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 ZNF138P52744 262 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 ERCC8Q13216 396 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 ALKAL2Q6UX46 152 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 CCDC28AQ8IWP9 274 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 HIST1H2BAQ96A08 127 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 VGLL1Q99990 258 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 TXNDC17Q9BRA2 123 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 MANBALQ9NQG1 85 aa9.35□□□□□ -0.91
SS18-222ENST00000582792 GAGE12BA1L429 117 aa9.34□□□□□ -0.91
SS18-222ENST00000582792 GAGE7O76087 117 aa9.34□□□□□ -0.91
SS18-222ENST00000582792 GAGE12FP0CL80 117 aa9.34□□□□□ -0.91
SS18-222ENST00000582792 GAGE12GP0CL81 117 aa9.34□□□□□ -0.91
SS18-222ENST00000582792 GAGE12IP0CL82 117 aa9.34□□□□□ -0.91
SS18-222ENST00000582792 PRB4P10163 310 aaPredicted RBP9.34□□□□□ -0.91
SS18-222ENST00000582792 Q6ZRN7 208 aaPredicted RBP9.34□□□□□ -0.91
SS18-222ENST00000582792 CYB561D1Q8N8Q1 229 aa9.34□□□□□ -0.91
SS18-222ENST00000582792 SRRM2Q9UQ35 2752 aaKnown RBP9.33□□□□□ -0.92
SS18-222ENST00000582792 KLLNB2CW77 178 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 F6UZH7 168 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 INAFM2P0DMQ5 153 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 TAGLN2P37802 199 aaKnown RBP9.33□□□□□ -0.92
SS18-222ENST00000582792 LINC00315P59091 139 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 UBE2G2P60604 165 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 KIR3DS1Q14943 382 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 GOLT1AQ6ZVE7 132 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 TMEM75Q8N9X5 138 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 LYPD6BQ8NI32 183 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 PGPEP1Q9NXJ5 209 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 MYCBP2O75592 4640 aa9.33□□□□□ -0.92
SS18-222ENST00000582792 SNURFLB1AK76 121 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 PEX7O00628 323 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 PAGE4O60829 102 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 IFNA1P01562 189 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 IFNA7P01567 189 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 GNG5P63218 68 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 GFI1BQ5VTD9 330 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 TEX261Q6UWH6 196 aa9.32□□□□□ -0.92
SS18-222ENST00000582792 A0A096LPF7 62 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 TRBV6-1A0A0K0K1D8 114 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 S100A9P06702 114 aaKnown RBP9.31□□□□□ -0.92
SS18-222ENST00000582792 XGP55808 180 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 CCL20P78556 96 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 CST9LP1Q5W188 147 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 ZFAND2AQ8N6M9 145 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 LINC00467Q9BRT7 94 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 RPH3ALQ9UNE2 315 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 VPS13BQ7Z7G8 4022 aa9.31□□□□□ -0.92
SS18-222ENST00000582792 A0A1B0GV50 99 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 C7orf71A4D174 169 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 IGLV2-11P01706 119 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 DAZ2Q13117 558 aaKnown RBP9.3□□□□□ -0.92
SS18-222ENST00000582792 CDPF1Q6NVV7 123 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 ZNF680Q8NEM1 530 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 VSIG2Q96IQ7 327 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 NDFIP1Q9BT67 221 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 GNG13Q9P2W3 67 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 PSG8Q9UQ74 426 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 KLF12Q9Y4X4 402 aa9.3□□□□□ -0.92
SS18-222ENST00000582792 EREGO14944 169 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 NDUFS6O75380 124 aaKnown RBP9.29□□□□□ -0.92
SS18-222ENST00000582792 ZNF324O75467 553 aaPredicted RBP9.29□□□□□ -0.92
SS18-222ENST00000582792 GPX1P07203 203 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 ERVFC1-1P60608 527 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 FLI1Q01543 452 aaPredicted RBP9.29□□□□□ -0.92
SS18-222ENST00000582792 SAPCD1Q5SSQ6 148 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 Q5VSD8 79 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 Q6AWC8 147 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 Q6ZTI0 123 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 Q8TAT8 98 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 FMC1Q96HJ9 113 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 PYGO2Q9BRQ0 406 aa9.29□□□□□ -0.92
SS18-222ENST00000582792 TRAV8-1A0A0A6YYK1 113 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 SIVA1O15304 175 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 BCL2P10415 239 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 FUSP35637 526 aaKnown RBP eCLIP9.28□□□□□ -0.92
SS18-222ENST00000582792 TMEM183BQ1AE95 376 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 COX8CQ7Z4L0 72 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 C11orf52Q96A22 123 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 C18orf15Q96N68 181 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 TREM1Q9NP99 234 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 VAX2Q9UIW0 290 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 ZFP30Q9Y2G7 519 aa9.28□□□□□ -0.92
SS18-222ENST00000582792 TRAV12-3A0A0B4J271 114 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 J3KRW8 73 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 PDE6DO43924 150 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 RNASE4P34096 147 aaKnown RBP9.27□□□□□ -0.93
SS18-222ENST00000582792 AKR1C3P42330 323 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 BTN1A1Q13410 526 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 FRZBQ92765 325 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 TVP23CQ96ET8 276 aa9.27□□□□□ -0.93
SS18-222ENST00000582792 TRGV2A0A075B6R0 118 aa9.26□□□□□ -0.93
SS18-222ENST00000582792 UBE2G1P62253 170 aa9.26□□□□□ -0.93
SS18-222ENST00000582792 MEF2BQ02080 365 aaPredicted RBP9.26□□□□□ -0.93
SS18-222ENST00000582792 ANXA2RQ3ZCQ2 193 aa9.26□□□□□ -0.93
SS18-222ENST00000582792 SMUG1Q53HV7 270 aa9.26□□□□□ -0.93
SS18-222ENST00000582792 PRR9Q5T870 116 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms