RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 KCNS1Q96KK3 526 aa16.59■□□□□ 0.25
SHMT1-206ENST00000579558 KANTRA0A1W2PQU2 76 aa16.58■□□□□ 0.24
SHMT1-206ENST00000579558 FAM74A7A6NL05 159 aa16.58■□□□□ 0.24
SHMT1-206ENST00000579558 BCL2L11O43521 198 aa16.58■□□□□ 0.24
SHMT1-206ENST00000579558 GCGP01275 180 aa16.58■□□□□ 0.24
SHMT1-206ENST00000579558 ZNF80P51504 273 aaPredicted RBP16.58■□□□□ 0.24
SHMT1-206ENST00000579558 SMUG1Q53HV7 270 aa16.58■□□□□ 0.24
SHMT1-206ENST00000579558 ZNF471Q9BX82 626 aaPredicted RBP16.58■□□□□ 0.24
SHMT1-206ENST00000579558 NKX6-2Q9C056 277 aaPredicted RBP16.58■□□□□ 0.24
SHMT1-206ENST00000579558 A0A096LPF7 62 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 TRAV34A0A0B4J273 112 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 PAX4O43316 350 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 STOML3Q8TAV4 291 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 RASL10AQ92737 203 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 LINC00479Q96M42 142 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 PRO0255Q9UI72 69 aa16.57■□□□□ 0.24
SHMT1-206ENST00000579558 PEX7O00628 323 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 SEC11BP0C7V7 166 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 FHITP49789 147 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 PPT1P50897 306 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 SLAQ13239 276 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 FHL2Q14192 279 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 ESRGQ1W209 222 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 SOHLH1Q5JUK2 328 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 SAPCD1Q5SSQ6 148 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 DNAH2Q9P225 4427 aa16.56■□□□□ 0.24
SHMT1-206ENST00000579558 TRGV4A0A0C4DH28 118 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 NBDYA0A0U1RRE5 68 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 PRSS29PA6NIE9 313 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 M0R2P5 195 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 PFN1P07737 140 aaKnown RBP16.55■□□□□ 0.24
SHMT1-206ENST00000579558 SFTA3P0C7M3 94 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 C1orf134Q5TEV5 83 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 C11orf21Q9P2W6 132 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 HHLA3Q9XRX5 114 aa16.55■□□□□ 0.24
SHMT1-206ENST00000579558 CRYBA4P53673 196 aa16.54■□□□□ 0.24
SHMT1-206ENST00000579558 HIST1H2BAQ96A08 127 aa16.54■□□□□ 0.24
SHMT1-206ENST00000579558 ZNF479Q96JC4 524 aa16.54■□□□□ 0.24
SHMT1-206ENST00000579558 ICOSQ9Y6W8 199 aa16.54■□□□□ 0.24
SHMT1-206ENST00000579558 ARL2-SNX15V9GYD0 113 aa16.54■□□□□ 0.24
SHMT1-206ENST00000579558 UMAD1C9J7I0 102 aa16.53■□□□□ 0.24
SHMT1-206ENST00000579558 PFDN1O60925 122 aa16.53■□□□□ 0.24
SHMT1-206ENST00000579558 EIF5AP63241 154 aaKnown RBP16.53■□□□□ 0.24
SHMT1-206ENST00000579558 FAM213BQ8TBF2 198 aa16.53■□□□□ 0.24
SHMT1-206ENST00000579558 Q9H8V8 135 aa16.53■□□□□ 0.24
SHMT1-206ENST00000579558 MRPS16Q9Y3D3 137 aaKnown RBP16.53■□□□□ 0.24
SHMT1-206ENST00000579558 TMUB2Q71RG4 321 aa16.52■□□□□ 0.24
SHMT1-206ENST00000579558 Q86TA4 180 aa16.52■□□□□ 0.24
SHMT1-206ENST00000579558 UPK3BQ9BT76 320 aa16.52■□□□□ 0.24
SHMT1-206ENST00000579558 HECTD4Q9Y4D8 3996 aa16.52■□□□□ 0.23
SHMT1-206ENST00000579558 TRAV4A0A0B4J268 109 aa16.51■□□□□ 0.23
SHMT1-206ENST00000579558 CST9LP1Q5W188 147 aa16.51■□□□□ 0.23
SHMT1-206ENST00000579558 OR4C5Q8NGB2 326 aa16.51■□□□□ 0.23
SHMT1-206ENST00000579558 SFT2D1Q8WV19 159 aa16.51■□□□□ 0.23
SHMT1-206ENST00000579558 DNAH17Q9UFH2 4485 aa16.51■□□□□ 0.23
SHMT1-206ENST00000579558 HERC2O95714 4834 aa16.5■□□□□ 0.23
SHMT1-206ENST00000579558 FAT2Q9NYQ8 4349 aa16.49■□□□□ 0.23
SHMT1-206ENST00000579558 TPT1P13693 172 aaKnown RBP16.49■□□□□ 0.23
SHMT1-206ENST00000579558 DPPA3Q6W0C5 159 aa16.49■□□□□ 0.23
SHMT1-206ENST00000579558 MBD3L1Q8WWY6 194 aa16.49■□□□□ 0.23
SHMT1-206ENST00000579558 A0A1B0GV50 99 aa16.48■□□□□ 0.23
SHMT1-206ENST00000579558 A0A1B0GVY2 172 aa16.48■□□□□ 0.23
SHMT1-206ENST00000579558 C9JCJ5 164 aa16.48■□□□□ 0.23
SHMT1-206ENST00000579558 MRPL23Q16540 153 aaKnown RBP16.48■□□□□ 0.23
SHMT1-206ENST00000579558 TCEAL7Q9BRU2 100 aa16.48■□□□□ 0.23
SHMT1-206ENST00000579558 FABP5P3A8MUU1 101 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 PAGE4O60829 102 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 UBE2G1P62253 170 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 TTC32Q5I0X7 151 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 C6orf223Q8N319 242 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 FMC1Q96HJ9 113 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 C9orf85Q96MD7 179 aa16.47■□□□□ 0.23
SHMT1-206ENST00000579558 ZNF876PQ49A33 203 aa16.46■□□□□ 0.23
SHMT1-206ENST00000579558 TCTE3Q8IZS6 198 aa16.46■□□□□ 0.23
SHMT1-206ENST00000579558 PCNPQ8WW12 178 aaKnown RBP16.46■□□□□ 0.23
SHMT1-206ENST00000579558 ZFP30Q9Y2G7 519 aa16.46■□□□□ 0.23
SHMT1-206ENST00000579558 H2AFB1P0C5Y9 115 aa16.45■□□□□ 0.22
SHMT1-206ENST00000579558 GYPEP15421 78 aa16.45■□□□□ 0.22
SHMT1-206ENST00000579558 AKR1C3P42330 323 aa16.45■□□□□ 0.22
SHMT1-206ENST00000579558 IGKV3D-20A0A0C4DH25 116 aa16.44■□□□□ 0.22
SHMT1-206ENST00000579558 ORM1P02763 201 aa16.44■□□□□ 0.22
SHMT1-206ENST00000579558 RNASE3P12724 160 aaKnown RBP16.44■□□□□ 0.22
SHMT1-206ENST00000579558 SRIP30626 198 aa16.44■□□□□ 0.22
SHMT1-206ENST00000579558 Q6ZNX1 250 aa16.44■□□□□ 0.22
SHMT1-206ENST00000579558 NEGR1Q7Z3B1 354 aa16.44■□□□□ 0.22
SHMT1-206ENST00000579558 ZC2HC1AQ96GY0 325 aa16.44■□□□□ 0.22
SHMT1-206ENST00000579558 K7EQD1 137 aa16.43■□□□□ 0.22
SHMT1-206ENST00000579558 S100A4P26447 101 aaKnown RBP16.43■□□□□ 0.22
SHMT1-206ENST00000579558 TRBV6-1A0A0K0K1D8 114 aa16.42■□□□□ 0.22
SHMT1-206ENST00000579558 NXPH4O95158 308 aa16.42■□□□□ 0.22
SHMT1-206ENST00000579558 LGALSLQ3ZCW2 172 aaPredicted RBP16.42■□□□□ 0.22
SHMT1-206ENST00000579558 LYPD5Q6UWN5 251 aa16.42■□□□□ 0.22
SHMT1-206ENST00000579558 COX8CQ7Z4L0 72 aa16.42■□□□□ 0.22
SHMT1-206ENST00000579558 KRTAP1-5Q9BYS1 174 aa16.42■□□□□ 0.22
SHMT1-206ENST00000579558 A0A1W2PPQ1 181 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 PGPEP1LA6NFU8 196 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 B4DEV8 164 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 RS1O15537 224 aa16.41■□□□□ 0.22
SHMT1-206ENST00000579558 GATA1P15976 413 aaPredicted RBP16.41■□□□□ 0.22
SHMT1-206ENST00000579558 ASIPP42127 132 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms