RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SOHLH1Q5JUK2 328 aa10.3□□□□□ -0.76
SS18-212ENST00000579061 MAP1LC3BQ9GZQ8 125 aa10.3□□□□□ -0.76
SS18-212ENST00000579061 PRO0255Q9UI72 69 aa10.3□□□□□ -0.76
SS18-212ENST00000579061 FAT2Q9NYQ8 4349 aa10.3□□□□□ -0.76
SS18-212ENST00000579061 A0A096LPF7 62 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 KANTRA0A1W2PQU2 76 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 FAM74A7A6NL05 159 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 UMAD1C9J7I0 102 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 M0R2P5 195 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 GNRH2O43555 120 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 TYMSP04818 313 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 PFN1P07737 140 aaKnown RBP10.29□□□□□ -0.76
SS18-212ENST00000579061 PPT1P50897 306 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 FGF8P55075 233 aaPredicted RBP10.29□□□□□ -0.76
SS18-212ENST00000579061 FHL2Q14192 279 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 ZFP69Q49AA0 526 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 PRNTQ86SH4 94 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 STOML3Q8TAV4 291 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 HIST1H2BAQ96A08 127 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 C8orf49Q96NF6 230 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 UPK3BQ9BT76 320 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 ARL2-SNX15V9GYD0 113 aa10.29□□□□□ -0.76
SS18-212ENST00000579061 NBDYA0A0U1RRE5 68 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 PAX4O43316 350 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 BCL2L11O43521 198 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 GCGP01275 180 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 IFNA7P01567 189 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 IGHV3-53P01767 116 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 FHITP49789 147 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 ZNF80P51504 273 aaPredicted RBP10.28□□□□□ -0.76
SS18-212ENST00000579061 UBE2G2P60604 165 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 EIF5AP63241 154 aaKnown RBP10.28□□□□□ -0.76
SS18-212ENST00000579061 ESRGQ1W209 222 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 C1orf134Q5TEV5 83 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 HHLA3Q9XRX5 114 aa10.28□□□□□ -0.76
SS18-212ENST00000579061 TRAV4A0A0B4J268 109 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 PRSS29PA6NIE9 313 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 PEX7O00628 323 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 CRYBA4P53673 196 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 TCEAL7Q9BRU2 100 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 ZNF471Q9BX82 626 aaPredicted RBP10.27□□□□□ -0.77
SS18-212ENST00000579061 Q9H8V8 135 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 MRPS16Q9Y3D3 137 aaKnown RBP10.27□□□□□ -0.77
SS18-212ENST00000579061 ICOSQ9Y6W8 199 aa10.27□□□□□ -0.77
SS18-212ENST00000579061 TRGV4A0A0C4DH28 118 aa10.26□□□□□ -0.77
SS18-212ENST00000579061 DPPA3Q6W0C5 159 aa10.26□□□□□ -0.77
SS18-212ENST00000579061 MBD3L1Q8WWY6 194 aa10.26□□□□□ -0.77
SS18-212ENST00000579061 ZNF479Q96JC4 524 aa10.26□□□□□ -0.77
SS18-212ENST00000579061 C11orf21Q9P2W6 132 aa10.26□□□□□ -0.77
SS18-212ENST00000579061 TRAV34A0A0B4J273 112 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 A0A1B0GVY2 172 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 SFTA3P0C7M3 94 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 MRPL23Q16540 153 aaKnown RBP10.25□□□□□ -0.77
SS18-212ENST00000579061 TTC32Q5I0X7 151 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 TMUB2Q71RG4 321 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 PTH2Q96A98 100 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 LINC00479Q96M42 142 aa10.25□□□□□ -0.77
SS18-212ENST00000579061 TRBV6-1A0A0K0K1D8 114 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 FABP5P3A8MUU1 101 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 CIDEAO60543 219 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 TPT1P13693 172 aaKnown RBP10.24□□□□□ -0.77
SS18-212ENST00000579061 COX8CQ7Z4L0 72 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 Q86TA4 180 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 OR4C5Q8NGB2 326 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 FMC1Q96HJ9 113 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 C9orf85Q96MD7 179 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 ZFP30Q9Y2G7 519 aa10.24□□□□□ -0.77
SS18-212ENST00000579061 A0A1W2PPQ1 181 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 PFDN1O60925 122 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 ORM1P02763 201 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 LGALSLQ3ZCW2 172 aaPredicted RBP10.23□□□□□ -0.77
SS18-212ENST00000579061 CST9LP1Q5W188 147 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 TCTE3Q8IZS6 198 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 C6orf223Q8N319 242 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 FAM213BQ8TBF2 198 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 SFT2D1Q8WV19 159 aa10.23□□□□□ -0.77
SS18-212ENST00000579061 BTF3P20290 206 aaKnown RBP10.22□□□□□ -0.77
SS18-212ENST00000579061 UBE2G1P62253 170 aa10.22□□□□□ -0.77
SS18-212ENST00000579061 NEGR1Q7Z3B1 354 aa10.22□□□□□ -0.77
SS18-212ENST00000579061 PCNPQ8WW12 178 aaKnown RBP10.22□□□□□ -0.77
SS18-212ENST00000579061 PKHD1P08F94 4074 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 C9JCJ5 164 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 K7EQD1 137 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 PAGE4O60829 102 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 H2AFB1P0C5Y9 115 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 RNASE3P12724 160 aaKnown RBP10.21□□□□□ -0.77
SS18-212ENST00000579061 ZNF876PQ49A33 203 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 Q6ZNX1 250 aa10.21□□□□□ -0.77
SS18-212ENST00000579061 IGKV3D-20A0A0C4DH25 116 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 RS1O15537 224 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 S100A9P06702 114 aaKnown RBP10.2□□□□□ -0.78
SS18-212ENST00000579061 GYPEP15421 78 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 GATA1P15976 413 aaPredicted RBP10.2□□□□□ -0.78
SS18-212ENST00000579061 SRIP30626 198 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 AKR1C3P42330 323 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 PKD1P98161 4303 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 PIK3CD-AS1Q5SR53 167 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 DNLZQ5SXM8 178 aa10.2□□□□□ -0.78
SS18-212ENST00000579061 EIF5AL1Q6IS14 154 aaKnown RBP10.2□□□□□ -0.78
SS18-212ENST00000579061 LYPD5Q6UWN5 251 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 183.7 ms