RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TRAV21A0A0B4J279 112 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 EPM2AB3EWF7 344 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 SSNA1O43805 119 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 TIRAPP58753 221 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 FAM74A1Q5RGS3 127 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 GOLT1AQ6ZVE7 132 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 OR4C5Q8NGB2 326 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 NAGKQ9UJ70 344 aa11.57□□□□□ -0.56
CLN3-216ENST00000565316 SRRM2Q9UQ35 2752 aaKnown RBP11.56□□□□□ -0.56
CLN3-216ENST00000565316 KRTAP10-1P60331 282 aa11.56□□□□□ -0.56
CLN3-216ENST00000565316 ACOT6Q3I5F7 207 aaPredicted RBP11.56□□□□□ -0.56
CLN3-216ENST00000565316 SH2D6Q7Z4S9 175 aa11.56□□□□□ -0.56
CLN3-216ENST00000565316 TRAV8-1A0A0A6YYK1 113 aa11.55□□□□□ -0.56
CLN3-216ENST00000565316 TYMSP04818 313 aa11.55□□□□□ -0.56
CLN3-216ENST00000565316 GATA1P15976 413 aaPredicted RBP11.55□□□□□ -0.56
CLN3-216ENST00000565316 C10orf126Q8N4M7 172 aa11.55□□□□□ -0.56
CLN3-216ENST00000565316 TREM1Q9NP99 234 aa11.55□□□□□ -0.56
CLN3-216ENST00000565316 RPH3ALQ9UNE2 315 aa11.55□□□□□ -0.56
CLN3-216ENST00000565316 DMBT1Q9UGM3 2413 aaPredicted RBP11.54□□□□□ -0.56
CLN3-216ENST00000565316 LOC100131303A0A0U1RQF7 123 aa11.54□□□□□ -0.56
CLN3-216ENST00000565316 CRYGDP07320 174 aa11.54□□□□□ -0.56
CLN3-216ENST00000565316 RAB2AP61019 212 aa11.54□□□□□ -0.56
CLN3-216ENST00000565316 KCNS1Q96KK3 526 aa11.54□□□□□ -0.56
CLN3-216ENST00000565316 SDF2L1Q9HCN8 221 aa11.54□□□□□ -0.56
CLN3-216ENST00000565316 A0A1W2PPV4 95 aa11.53□□□□□ -0.56
CLN3-216ENST00000565316 F6UZH7 168 aa11.53□□□□□ -0.56
CLN3-216ENST00000565316 GNG5P63218 68 aa11.52□□□□□ -0.57
CLN3-216ENST00000565316 OR10G9Q8NGN4 311 aa11.52□□□□□ -0.57
CLN3-216ENST00000565316 OR10G7Q8NGN6 311 aa11.52□□□□□ -0.57
CLN3-216ENST00000565316 SUN5Q8TC36 379 aa11.52□□□□□ -0.57
CLN3-216ENST00000565316 ASB13Q8WXK3 278 aa11.52□□□□□ -0.57
CLN3-216ENST00000565316 MYCBP2O75592 4640 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 DNAH8Q96JB1 4490 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 SERTM2A0A1B0GWG4 89 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 DEFA1P59665 94 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 DEFA3P59666 94 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 LINC01556Q5JQF7 62 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 C11orf21Q9P2W6 132 aa11.51□□□□□ -0.57
CLN3-216ENST00000565316 IGHV3-38A0A0C4DH36 116 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 FBLL1A6NHQ2 334 aaKnown RBP11.5□□□□□ -0.57
CLN3-216ENST00000565316 HMGB3O15347 200 aaKnown RBP11.5□□□□□ -0.57
CLN3-216ENST00000565316 RS1O15537 224 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 CIDEAO60543 219 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 PFN1P07737 140 aaKnown RBP11.5□□□□□ -0.57
CLN3-216ENST00000565316 STAG3L2P0CL84 134 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 STAG3L3P0CL85 134 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 ARL14EPLP0DKL9 152 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 GCSHP23434 173 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 NHLRC2Q8NBF2 726 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 OR2G3Q8NGZ4 309 aa11.5□□□□□ -0.57
CLN3-216ENST00000565316 LRCOL1A6NCL2 159 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 INAFM2P0DMQ5 153 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 ZNF80P51504 273 aaPredicted RBP11.49□□□□□ -0.57
CLN3-216ENST00000565316 ZNF876PQ49A33 203 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 CFAP126Q5VTH2 177 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 DPPA3Q6W0C5 159 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 SLC25A29Q8N8R3 303 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 C5orf17Q8NAS9 161 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 PTH2Q96A98 100 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 SGK494Q96LW2 274 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 NDFIP1Q9BT67 221 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 BOLA1Q9Y3E2 137 aa11.49□□□□□ -0.57
CLN3-216ENST00000565316 TRBV6-4A0A1B0GX49 114 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 IBA57-AS1B1ANH7 110 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 IGLV2-11P01706 119 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 TCRAP04437 139 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 CDC34P49427 236 aaPredicted RBP11.48□□□□□ -0.57
CLN3-216ENST00000565316 PPT1P50897 306 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 Q5VSD8 79 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 C9orf85Q96MD7 179 aa11.48□□□□□ -0.57
CLN3-216ENST00000565316 TAAR5O14804 337 aa11.47□□□□□ -0.57
CLN3-216ENST00000565316 RHOHQ15669 191 aa11.47□□□□□ -0.57
CLN3-216ENST00000565316 NTN5Q8WTR8 489 aaPredicted RBP11.47□□□□□ -0.57
CLN3-216ENST00000565316 FRZBQ92765 325 aa11.47□□□□□ -0.57
CLN3-216ENST00000565316 RAB24Q969Q5 203 aa11.47□□□□□ -0.57
CLN3-216ENST00000565316 PRADC1Q9BSG0 188 aa11.47□□□□□ -0.57
CLN3-216ENST00000565316 PSMG3Q9BT73 122 aaPredicted RBP11.47□□□□□ -0.57
CLN3-216ENST00000565316 TRAV8-6A0A0B4J262 113 aa11.46□□□□□ -0.57
CLN3-216ENST00000565316 GCHFRP30047 84 aa11.46□□□□□ -0.57
CLN3-216ENST00000565316 PSG8Q9UQ74 426 aa11.46□□□□□ -0.57
CLN3-216ENST00000565316 K7EQM0 130 aa11.45□□□□□ -0.58
CLN3-216ENST00000565316 GCGP01275 180 aa11.45□□□□□ -0.58
CLN3-216ENST00000565316 LELP1Q5T871 98 aa11.45□□□□□ -0.58
CLN3-216ENST00000565316 HSD17B11Q8NBQ5 300 aa11.45□□□□□ -0.58
CLN3-216ENST00000565316 EPDR1Q9UM22 224 aa11.45□□□□□ -0.58
CLN3-216ENST00000565316 PGPEP1LA6NFU8 196 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 GGTLC3B5MD39 225 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 PSCAO43653 123 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 MBP02144 154 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 RNASE3P12724 160 aaKnown RBP11.44□□□□□ -0.58
CLN3-216ENST00000565316 SERF2P84101 59 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 FLI1Q01543 452 aaPredicted RBP11.44□□□□□ -0.58
CLN3-216ENST00000565316 SMUG1Q53HV7 270 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 OR10J3Q5JRS4 329 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 ZNF506Q5JVG8 444 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 TMEM75Q8N9X5 138 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 AQP10Q96PS8 301 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 GTSF1LQ9H1H1 148 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 ALG5Q9Y673 324 aa11.44□□□□□ -0.58
CLN3-216ENST00000565316 IGLV5-52A0A0A0MRZ9 124 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms