RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SPXQ9BT56 116 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 KRTAP4-5Q9BYR2 181 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 RNF222A6NCQ9 220 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 GGTLC3B5MD39 225 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 K7EQD1 137 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 TCRAP04437 139 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 GIPP09681 153 aaPredicted RBP7.39□□□□□ -1.23
VPS39-208ENST00000564994 BTF3P20290 206 aaKnown RBP7.39□□□□□ -1.23
VPS39-208ENST00000564994 ZNF80P51504 273 aaPredicted RBP7.39□□□□□ -1.23
VPS39-208ENST00000564994 KRTAP10-2P60368 255 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 MRPL23Q16540 153 aaKnown RBP7.39□□□□□ -1.23
VPS39-208ENST00000564994 Q6ZRN7 208 aaPredicted RBP7.39□□□□□ -1.23
VPS39-208ENST00000564994 C11orf21Q9P2W6 132 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 TNFRSF18Q9Y5U5 241 aa7.39□□□□□ -1.23
VPS39-208ENST00000564994 TRAV4A0A0B4J268 109 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 M0R2P5 195 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 IGLV2-11P01706 119 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 GYPEP15421 78 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 SERF2P84101 59 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 RPL7L1Q6DKI1 246 aaKnown RBP7.38□□□□□ -1.23
VPS39-208ENST00000564994 NEGR1Q7Z3B1 354 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 C5orf17Q8NAS9 161 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 TNFSF18Q9UNG2 199 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 PSG8Q9UQ74 426 aa7.38□□□□□ -1.23
VPS39-208ENST00000564994 FAT1Q14517 4588 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 LOC100131303A0A0U1RQF7 123 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 SERTM2A0A1B0GWG4 89 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 G3V3Q6 166 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 CDK2AP2O75956 126 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 MBP02144 154 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 SUMO1P63165 101 aaKnown RBP7.37□□□□□ -1.23
VPS39-208ENST00000564994 ZNF726P1Q15940 193 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 TMEM75Q8N9X5 138 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 OR4C5Q8NGB2 326 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 ASB13Q8WXK3 278 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 ACTR3CQ9C0K3 210 aaPredicted RBP7.37□□□□□ -1.23
VPS39-208ENST00000564994 SDF2L1Q9HCN8 221 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 EPDR1Q9UM22 224 aa7.37□□□□□ -1.23
VPS39-208ENST00000564994 FXYD6-FXYD2A0A087WZ82 144 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 CXorf1O96002 111 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 GCGP01275 180 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 SRIP30626 198 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 LCE2DQ5TA82 110 aaPredicted RBP7.36□□□□□ -1.23
VPS39-208ENST00000564994 WFDC10BQ8IUB3 73 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 INO80EQ8NBZ0 244 aaPredicted RBP7.36□□□□□ -1.23
VPS39-208ENST00000564994 KCNS1Q96KK3 526 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 NDFIP1Q9BT67 221 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 TMEM167BQ9NRX6 74 aa7.36□□□□□ -1.23
VPS39-208ENST00000564994 ORM1P02763 201 aa7.35□□□□□ -1.23
VPS39-208ENST00000564994 FLI1Q01543 452 aaPredicted RBP7.35□□□□□ -1.23
VPS39-208ENST00000564994 DPPA3Q6W0C5 159 aa7.35□□□□□ -1.23
VPS39-208ENST00000564994 PRNTQ86SH4 94 aa7.35□□□□□ -1.23
VPS39-208ENST00000564994 CYB561D1Q8N8Q1 229 aa7.35□□□□□ -1.23
VPS39-208ENST00000564994 OR2T35Q8NGX2 323 aa7.35□□□□□ -1.23
VPS39-208ENST00000564994 LINC00479Q96M42 142 aa7.35□□□□□ -1.23
VPS39-208ENST00000564994 BORCS7-ASMTA0A0B4J1R7 106 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 TRAV34A0A0B4J273 112 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 A0A1W2PRE2 83 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 C9JCJ5 164 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 K7EQM0 130 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 TAAR5O14804 337 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 PFN1P07737 140 aaKnown RBP7.34□□□□□ -1.23
VPS39-208ENST00000564994 GATA1P15976 413 aaPredicted RBP7.34□□□□□ -1.23
VPS39-208ENST00000564994 FUSP35637 526 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS39-208ENST00000564994 ZNF876PQ49A33 203 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 SMUG1Q53HV7 270 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 PCNPQ8WW12 178 aaKnown RBP7.34□□□□□ -1.23
VPS39-208ENST00000564994 C9orf85Q96MD7 179 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 LY96Q9Y6Y9 160 aa7.34□□□□□ -1.23
VPS39-208ENST00000564994 CTXND1A0A1B0GTU2 59 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 PGPEP1LA6NFU8 196 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 RS1O15537 224 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 DNAH10OSP0CZ25 163 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 RNASE3P12724 160 aaKnown RBP7.33□□□□□ -1.24
VPS39-208ENST00000564994 FGF8P55075 233 aaPredicted RBP7.33□□□□□ -1.24
VPS39-208ENST00000564994 UBE2G2P60604 165 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 CFAP126Q5VTH2 177 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 SLC25A29Q8N8R3 303 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 TXNDC17Q9BRA2 123 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 CYTL1Q9NRR1 136 aa7.33□□□□□ -1.24
VPS39-208ENST00000564994 IGHV3-73A0A0B4J1V6 119 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 IGKV3D-20A0A0C4DH25 116 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 FBLL1A6NHQ2 334 aaKnown RBP7.32□□□□□ -1.24
VPS39-208ENST00000564994 ARPC5O15511 151 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 RGS21Q2M5E4 152 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 ZFP69Q49AA0 526 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 ZNF506Q5JVG8 444 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 SAPCD1Q5SSQ6 148 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 MAPKAPK5-AS1Q8N8E1 139 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 ARL2-SNX15V9GYD0 113 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 DNAH8Q96JB1 4490 aa7.32□□□□□ -1.24
VPS39-208ENST00000564994 TRAV9-2A0A087WT02 112 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 TRBV6-4A0A1B0GX49 114 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 FAM74A7A6NL05 159 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 SMLR1H3BR10 107 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 PEX7O00628 323 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 IFNA7P01567 189 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 EVI2AP22794 236 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 NFE4Q86UQ8 179 aa7.31□□□□□ -1.24
VPS39-208ENST00000564994 NHLRC2Q8NBF2 726 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 265.1 ms