RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TVP23CQ96ET8 276 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 SMIM3Q9BZL3 60 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 OTORQ9NRC9 128 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 F6UZH7 168 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 TYMSP04818 313 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 PPT1P50897 306 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 TAS2R45P59539 299 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 CMTM2Q8TAZ6 248 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 PPP1R1CQ8WVI7 109 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 MBD2Q9UBB5 411 aa11.31□□□□□ -0.6
CLN3-211ENST00000564091 TRAV8-1A0A0A6YYK1 113 aa11.3□□□□□ -0.6
CLN3-211ENST00000564091 TRAV21A0A0B4J279 112 aa11.3□□□□□ -0.6
CLN3-211ENST00000564091 GATA1P15976 413 aaPredicted RBP11.3□□□□□ -0.6
CLN3-211ENST00000564091 H2BFSP57053 126 aa11.3□□□□□ -0.6
CLN3-211ENST00000564091 CYCSP99999 105 aaKnown RBP11.3□□□□□ -0.6
CLN3-211ENST00000564091 ENKURQ8TC29 256 aa11.3□□□□□ -0.6
CLN3-211ENST00000564091 SCGB1C1Q8TD33 95 aa11.3□□□□□ -0.6
CLN3-211ENST00000564091 NDUFA13Q9P0J0 144 aa11.3□□□□□ -0.6
CLN3-211ENST00000564091 FAM229AH3BQW9 127 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 TIRAPP58753 221 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 LINC01556Q5JQF7 62 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 SH2D6Q7Z4S9 175 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 Q9HAA7 133 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 TREM1Q9NP99 234 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 HSPB11Q9Y547 144 aa11.29□□□□□ -0.6
CLN3-211ENST00000564091 IBA57-AS1B1ANH7 110 aa11.28□□□□□ -0.6
CLN3-211ENST00000564091 GNG5P63218 68 aa11.28□□□□□ -0.6
CLN3-211ENST00000564091 SLC25A29Q8N8R3 303 aa11.28□□□□□ -0.6
CLN3-211ENST00000564091 SGK494Q96LW2 274 aa11.28□□□□□ -0.6
CLN3-211ENST00000564091 SDF2L1Q9HCN8 221 aa11.28□□□□□ -0.6
CLN3-211ENST00000564091 IGHV3-73A0A0B4J1V6 119 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 FBLL1A6NHQ2 334 aaKnown RBP11.27□□□□□ -0.61
CLN3-211ENST00000564091 INMT-MINDY4F8WBC2 141 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 IGHV3-30P01768 117 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 IGHV3-33P01772 117 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 IGHV3-30-3P0DP02 117 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 IGHV3-30-5P0DP03 117 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 OR10J3Q5JRS4 329 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 FAM74A1Q5RGS3 127 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 DPPA3Q6W0C5 159 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 Q8N814 137 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 NTN5Q8WTR8 489 aaPredicted RBP11.27□□□□□ -0.61
CLN3-211ENST00000564091 ASB13Q8WXK3 278 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 WFDC1Q9HC57 220 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 FAM30AQ9NZY2 134 aa11.27□□□□□ -0.61
CLN3-211ENST00000564091 TRAV8-6A0A0B4J262 113 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 HMGB3O15347 200 aaKnown RBP11.26□□□□□ -0.61
CLN3-211ENST00000564091 MPC2O95563 127 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 PFN1P07737 140 aaKnown RBP11.26□□□□□ -0.61
CLN3-211ENST00000564091 RPL12P30050 165 aaKnown RBP11.26□□□□□ -0.61
CLN3-211ENST00000564091 ZNF876PQ49A33 203 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 Q6ZSN1 163 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 KCNS1Q96KK3 526 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 TMEM70Q9BUB7 260 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 C11orf21Q9P2W6 132 aa11.26□□□□□ -0.61
CLN3-211ENST00000564091 A0A1W2PPV4 95 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 RAB2AP61019 212 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 IFITM3Q01628 133 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 CFAP126Q5VTH2 177 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 PQLC2Q6ZP29 291 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 S100ZQ8WXG8 99 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 PRADC1Q9BSG0 188 aa11.25□□□□□ -0.61
CLN3-211ENST00000564091 RS1O15537 224 aa11.24□□□□□ -0.61
CLN3-211ENST00000564091 UPK1BO75841 260 aa11.24□□□□□ -0.61
CLN3-211ENST00000564091 ZNF80P51504 273 aaPredicted RBP11.24□□□□□ -0.61
CLN3-211ENST00000564091 ACOT6Q3I5F7 207 aaPredicted RBP11.24□□□□□ -0.61
CLN3-211ENST00000564091 TRBV6-4A0A1B0GX49 114 aa11.23□□□□□ -0.61
CLN3-211ENST00000564091 SSNA1O43805 119 aa11.23□□□□□ -0.61
CLN3-211ENST00000564091 RHOHQ15669 191 aa11.23□□□□□ -0.61
CLN3-211ENST00000564091 LELP1Q5T871 98 aa11.23□□□□□ -0.61
CLN3-211ENST00000564091 LINC00299Q6ZSB3 139 aa11.23□□□□□ -0.61
CLN3-211ENST00000564091 ARL6IP6Q8N6S5 226 aa11.23□□□□□ -0.61
CLN3-211ENST00000564091 PET100P0DJ07 73 aa11.22□□□□□ -0.61
CLN3-211ENST00000564091 WFDC2Q14508 124 aa11.22□□□□□ -0.61
CLN3-211ENST00000564091 Q8N3U1 123 aa11.22□□□□□ -0.61
CLN3-211ENST00000564091 TMEM75Q8N9X5 138 aa11.22□□□□□ -0.61
CLN3-211ENST00000564091 OR10G9Q8NGN4 311 aa11.22□□□□□ -0.61
CLN3-211ENST00000564091 OR10G7Q8NGN6 311 aa11.22□□□□□ -0.61
CLN3-211ENST00000564091 PGPEP1LA6NFU8 196 aa11.21□□□□□ -0.61
CLN3-211ENST00000564091 ATP6V0E2Q8NHE4 81 aa11.21□□□□□ -0.61
CLN3-211ENST00000564091 MARVELD1Q9BSK0 173 aa11.21□□□□□ -0.61
CLN3-211ENST00000564091 NDFIP1Q9BT67 221 aa11.21□□□□□ -0.61
CLN3-211ENST00000564091 GTSF1LQ9H1H1 148 aa11.21□□□□□ -0.61
CLN3-211ENST00000564091 TAAR5O14804 337 aa11.2□□□□□ -0.62
CLN3-211ENST00000564091 GCGP01275 180 aa11.2□□□□□ -0.62
CLN3-211ENST00000564091 TCRAP04437 139 aa11.2□□□□□ -0.62
CLN3-211ENST00000564091 ARL14EPLP0DKL9 152 aa11.2□□□□□ -0.62
CLN3-211ENST00000564091 ZNF506Q5JVG8 444 aa11.2□□□□□ -0.62
CLN3-211ENST00000564091 C9orf85Q96MD7 179 aa11.2□□□□□ -0.62
CLN3-211ENST00000564091 J3QL48 77 aa11.19□□□□□ -0.62
CLN3-211ENST00000564091 CIDEAO60543 219 aa11.19□□□□□ -0.62
CLN3-211ENST00000564091 PSG8Q9UQ74 426 aa11.19□□□□□ -0.62
CLN3-211ENST00000564091 LECT2O14960 151 aa11.18□□□□□ -0.62
CLN3-211ENST00000564091 RNASE3P12724 160 aaKnown RBP11.18□□□□□ -0.62
CLN3-211ENST00000564091 CDC34P49427 236 aaPredicted RBP11.18□□□□□ -0.62
CLN3-211ENST00000564091 TM2D2Q9BX73 214 aa11.18□□□□□ -0.62
CLN3-211ENST00000564091 BOLA1Q9Y3E2 137 aa11.18□□□□□ -0.62
CLN3-211ENST00000564091 LRP1Q07954 4544 aaKnown RBP11.18□□□□□ -0.62
CLN3-211ENST00000564091 SERTM2A0A1B0GWG4 89 aa11.17□□□□□ -0.62
CLN3-211ENST00000564091 GAGE12JA6NER3 117 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms