RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 IGHV1OR15-1A0A075B7D0 117 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 ZNF705GA8MUZ8 300 aaPredicted RBP6.96□□□□□ -1.3
CUX1-216ENST00000558469 ANXA2RQ3ZCQ2 193 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 OR11H2Q8NH07 326 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 SPATA25Q9BR10 227 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 TM2D3Q9BRN9 247 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 OVOL2Q9BRP0 275 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 PYGO2Q9BRQ0 406 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 TP53TG3Q9ULZ0 132 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 TP53TG1Q9Y2A0 90 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 COL7A1Q02388 2944 aa6.96□□□□□ -1.3
CUX1-216ENST00000558469 C19orf71A6NCJ1 209 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 CBY3A6NI87 242 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 B4DEV8 164 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 M0R036 132 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 P01737 135 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 AZU1P20160 251 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 ERVFC1-1P60608 527 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 C10orf91Q5T1B1 145 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 IBA57Q5T440 356 aaKnown RBP6.95□□□□□ -1.3
CUX1-216ENST00000558469 NUDT10Q8NFP7 164 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 ISOC2Q96AB3 205 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 NUDT11Q96G61 164 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 KCNS1Q96KK3 526 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 ZMAT4Q9H898 229 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 X6R8D5 127 aa6.95□□□□□ -1.3
CUX1-216ENST00000558469 TMSB15BA0A087X1C1 80 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 IGKV3D-20A0A0C4DH25 116 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 TMEM189A5PLL7 270 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 SMIM9A6NGZ8 99 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 KRBOX1C9JBD0 128 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 GNRH2O43555 120 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 RPL19P84098 196 aaKnown RBP6.94□□□□□ -1.3
CUX1-216ENST00000558469 PNRC1Q12796 327 aaPredicted RBP6.94□□□□□ -1.3
CUX1-216ENST00000558469 RRN3P1Q2M238 152 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 TDRG1Q3Y452 100 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 SFRP2Q96HF1 295 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 NEU1Q99519 415 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 LINC00467Q9BRT7 94 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 TENM3Q9P273 2699 aa6.94□□□□□ -1.3
CUX1-216ENST00000558469 GRIFINA4D1Z8 144 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 FAM229AH3BQW9 127 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 GATCO43716 136 aaKnown RBP6.93□□□□□ -1.3
CUX1-216ENST00000558469 APOC3P02656 99 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 TYMSP04818 313 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 MIFP14174 115 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 FAM231DQ6ZW35 169 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 C15orf54Q8N8G6 183 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 OR2D3Q8NGH3 330 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 RPP21Q9H633 154 aaKnown RBP6.93□□□□□ -1.3
CUX1-216ENST00000558469 CARHSP1Q9Y2V2 147 aaKnown RBP6.93□□□□□ -1.3
CUX1-216ENST00000558469 MUC4Q99102 2169 aa6.93□□□□□ -1.3
CUX1-216ENST00000558469 TRGV11A0A075B6L2 103 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 IGHV4-28A0A0C4DH34 117 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 DEFB4AO15263 64 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 NHLRC4P0CG21 123 aaPredicted RBP6.92□□□□□ -1.3
CUX1-216ENST00000558469 EMP1P54849 157 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 ZNF575Q86XF7 245 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 Q8NAQ8 132 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 OR10G8Q8NGN5 311 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 RNASE8Q8TDE3 154 aaKnown RBP6.92□□□□□ -1.3
CUX1-216ENST00000558469 TMEM263Q8WUH6 116 aaKnown RBP6.92□□□□□ -1.3
CUX1-216ENST00000558469 C16orf74Q96GX8 76 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 GSN-AS1Q9NRJ2 163 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 OSTCQ9NRP0 149 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 MDFICQ9P1T7 246 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 TIMM8BQ9Y5J9 83 aaPredicted RBP6.92□□□□□ -1.3
CUX1-216ENST00000558469 FBN3Q75N90 2809 aa6.92□□□□□ -1.3
CUX1-216ENST00000558469 PRKDCP78527 4128 aaKnown RBP6.91□□□□□ -1.3
CUX1-216ENST00000558469 IGHV3-16A0A0C4DH30 117 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 XKRY2A2RUG3 117 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 SNURFLB1AK76 121 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 GZMBP10144 247 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 S100A4P26447 101 aaKnown RBP6.91□□□□□ -1.3
CUX1-216ENST00000558469 ASIPP42127 132 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 RPS20P60866 119 aaKnown RBP6.91□□□□□ -1.3
CUX1-216ENST00000558469 ZNF415Q09FC8 603 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 RNF212Q495C1 297 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 ZNF493Q6ZR52 646 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 C11orf72Q8NBR9 251 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 V9GYV3 84 aa6.91□□□□□ -1.3
CUX1-216ENST00000558469 PLAC8L1A1L4L8 177 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 A8MWL6 223 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 H3BVH4 76 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 MT-ND4LP03901 98 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 RNASE3P12724 160 aaKnown RBP6.9□□□□□ -1.3
CUX1-216ENST00000558469 DNLZQ5SXM8 178 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 SVBPQ8N300 66 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 CLRN3Q8NCR9 226 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 ANAPC16Q96DE5 110 aa6.9□□□□□ -1.3
CUX1-216ENST00000558469 NOP10Q9NPE3 64 aaKnown RBP6.9□□□□□ -1.3
CUX1-216ENST00000558469 A0A0J9YWU9 116 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 PPP1R2P9O14990 202 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 SNAPINO95295 136 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 CXCL1P09341 107 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 ARMS2P0C7Q2 107 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 TCL1AP56279 114 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 CT83Q5H943 113 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 TPPP3Q9BW30 176 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 C11orf68Q9H3H3 251 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms