RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 IGKV1OR2-108A0A075B7D4 117 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 TRAV12-3A0A0B4J271 114 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 C3orf85A0A1B0GTC6 90 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 FAM25AB3EWG3 89 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 FAM25CB3EWG5 89 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 FAM25GB3EWG6 89 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 BOLA2-SMG1P6H3BVE0 249 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 ZNF701M0R085 212 aaPredicted RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SLC17A3O00476 420 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 NOL3O60936 208 aaKnown RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 EIF3GO75821 320 aaKnown RBP eCLIP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SCGNO76038 276 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SLC22A5O76082 557 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 IGLV2-8P01709 118 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 CD3DP04234 171 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SFTA3P0C7M3 94 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 RD3LP0DJH9 198 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 ORM2P19652 201 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 RCVRNP35243 200 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 EIF2B2P49770 351 aaKnown RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 CCL18P55774 89 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 CMC4P56277 68 aaPredicted RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 TAS2R46P59540 309 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 VBP1P61758 197 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 NUTF2P61970 127 aaKnown RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 RRAS2P62070 204 aaPredicted RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SNRPD3P62318 126 aaKnown RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 ERCC8Q13216 396 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 TRAM1Q15629 374 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 UBE2NLQ5JXB2 153 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 PRR9Q5T870 116 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 EBLN2Q6P2I7 272 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 Q6ZTI0 123 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 WFDC10BQ8IUB3 73 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 CMTM1Q8IZ96 169 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SELENOHQ8IZQ5 122 aaKnown RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 C15orf53Q8NAA6 179 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 OR4X1Q8NH49 305 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 Q8WTZ3 238 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 GNPNAT1Q96EK6 184 aaPredicted RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 NARS2Q96I59 477 aaKnown RBP1.51□□□□□ -2.17
SCFD1-219ENST00000556413 DNAJC30Q96LL9 226 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 IGF2BP2-AS1Q96M15 143 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 TSC22D3Q99576 134 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 DIABLOQ9NR28 239 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 COPZ2Q9P299 210 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 ANAPC10Q9UM13 185 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 SSR3Q9UNL2 185 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 TNXBP22105 4242 aa1.51□□□□□ -2.17
SCFD1-219ENST00000556413 A0A087WTM6 91 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 TRGV1A0A0A0MS02 117 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 IGHV3-73A0A0B4J1V6 119 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 TRAV2A0A0B4J234 112 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 TRAV5A0A0B4J249 113 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 TMEM189A5PLL7 270 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 K7EQM0 130 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 TNFAIP8O95379 198 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 ATP5G1P05496 136 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 PRSS3P35030 304 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 HTR2BP41595 481 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 ATP5G3P48201 142 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 PSMB3P49720 205 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 UBE2MP61081 183 aaKnown RBP1.5□□□□□ -2.17
SCFD1-219ENST00000556413 SUPT4H1P63272 117 aaKnown RBP1.5□□□□□ -2.17
SCFD1-219ENST00000556413 AKR1C1Q04828 323 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 SLC38A11Q08AI6 406 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 BTN1A1Q13410 526 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 MSMO1Q15800 293 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 BSXQ3C1V8 233 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 RNASE10Q5GAN6 216 aaKnown RBP1.5□□□□□ -2.17
SCFD1-219ENST00000556413 NMSQ5H8A3 153 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 THOC7Q6I9Y2 204 aaKnown RBP1.5□□□□□ -2.17
SCFD1-219ENST00000556413 LPCAT3Q6P1A2 487 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 LYZL2Q7Z4W2 148 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 TMED4Q7Z7H5 227 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 OR8I2Q8N0Y5 310 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 DTD1Q8TEA8 209 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 GPX8Q8TED1 209 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 CHAC1Q9BUX1 264 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 FKBP11Q9NYL4 201 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 EXTL2Q9UBQ6 330 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 KCNIP3Q9Y2W7 256 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 MRPS16Q9Y3D3 137 aaKnown RBP1.5□□□□□ -2.17
SCFD1-219ENST00000556413 KLF12Q9Y4X4 402 aa1.5□□□□□ -2.17
SCFD1-219ENST00000556413 DMBT1Q9UGM3 2413 aaPredicted RBP1.49□□□□□ -2.17
SCFD1-219ENST00000556413 TRGV2A0A075B6R0 118 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 IGKV2-40A0A087WW87 121 aaPredicted RBP1.49□□□□□ -2.17
SCFD1-219ENST00000556413 CRYM-AS1A6NIL9 109 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 ZNF98A6NK75 572 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 H3BRN7 92 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 M0R3E3 92 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 WRBO00258 174 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 SIVA1O15304 175 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 SSSCA1O60232 199 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 RAB3DO95716 219 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 IGKV2D-40P01614 121 aaPredicted RBP1.49□□□□□ -2.17
SCFD1-219ENST00000556413 IGHV3-30P01768 117 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 IGHV3-33P01772 117 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 RLN2P04090 185 aa1.49□□□□□ -2.17
SCFD1-219ENST00000556413 OR5G3P0C626 314 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms