RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 A0A087WSZ3 146 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 PIGBOS1A0A0B4J2F0 54 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 CYB5AP00167 134 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 S100A7L2Q5SY68 101 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 OR8B3Q8NGG8 313 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 PMCHL2Q9BQD1 86 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 NDUFA12Q9UI09 145 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 HMSDA8MTL9 139 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 SLC25A6P12236 298 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 MIFP14174 115 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 ADCYAP1P18509 176 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 NDPQ00604 133 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 LINC00483Q53H64 154 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 ALKAL2Q6UX46 152 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 C15orf53Q8NAA6 179 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 TMEM254Q8TBM7 123 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 TMEM141Q96I45 108 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 MYLKQ15746 1914 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 SCN4AP35499 1836 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 KIDINS220Q9ULH0 1771 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 CHD1O14646 1710 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 ARAP2Q8WZ64 1704 aa3.81□□□□□ -1.8
VPS29-210ENST00000552130 CUL9Q8IWT3 2517 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 COL27A1Q8IZC6 1860 aaPredicted RBP3.8□□□□□ -1.8
VPS29-210ENST00000552130 TMEM136Q6ZRR5 245 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 COMMD6Q7Z4G1 85 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 SCRT1Q9BWW7 348 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 REG4Q9BYZ8 158 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 KLK12Q9UKR0 248 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 KIF25-AS1Q9Y6Z4 181 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 SHANK3Q9BYB0 1731 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 USP54Q70EL1 1684 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 CCDC88CQ9P219 2028 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 ADGRB3O60242 1522 aa3.8□□□□□ -1.8
VPS29-210ENST00000552130 PXDNLA1KZ92 1463 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 ERVK-7P63135 1459 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 CPSF1Q10570 1443 aaKnown RBP3.79□□□□□ -1.8
VPS29-210ENST00000552130 KIAA2026Q5HYC2 2103 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 TRAV2A0A0B4J234 112 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 IBA57-AS1B1ANH7 110 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 SFT2D2O95562 160 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 IGKCP01834 107 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 SPINT4Q6UDR6 99 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 HIGD2AQ9BW72 106 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 UQCR10Q9UDW1 63 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 ZSWIM8A7E2V4 1837 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 SLX4Q8IY92 1834 aa3.79□□□□□ -1.8
VPS29-210ENST00000552130 IGLV2-18A0A075B6J9 118 aa3.78□□□□□ -1.8
VPS29-210ENST00000552130 hADV29S1A0JD25 119 aa3.78□□□□□ -1.8
VPS29-210ENST00000552130 PSCAO43653 123 aa3.78□□□□□ -1.8
VPS29-210ENST00000552130 CCKP06307 115 aa3.78□□□□□ -1.8
VPS29-210ENST00000552130 CBLN1P23435 193 aa3.78□□□□□ -1.8
VPS29-210ENST00000552130 ZNF791Q3KP31 576 aaPredicted RBP3.78□□□□□ -1.8
VPS29-210ENST00000552130 SCAPERQ9BY12 1400 aa3.78□□□□□ -1.8
VPS29-210ENST00000552130 TUBGCP6Q96RT7 1819 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 IGKV3D-11A0A0A0MRZ8 115 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 TRAV10A0A0B4J240 114 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 TCRBV4S1A1TA0A5B7 111 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 IGLC7A0M8Q6 106 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 ERC2-IT1O76042 136 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 APOC3P02656 99 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 ASAH2BP0C7U1 165 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 UBE2G1P62253 170 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 RHOHQ15669 191 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 Q1T7F1 81 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 DEFB113Q30KQ7 82 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 RPL7L1Q6DKI1 246 aaKnown RBP3.77□□□□□ -1.81
VPS29-210ENST00000552130 TSLPQ969D9 159 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 S100A16Q96FQ6 103 aaKnown RBP3.77□□□□□ -1.81
VPS29-210ENST00000552130 C20orf78Q9BR46 151 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 ABCA3Q99758 1704 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 SDK2Q58EX2 2172 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 PRR14LQ5THK1 2151 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 DOCK1Q14185 1865 aa3.77□□□□□ -1.81
VPS29-210ENST00000552130 CDC42BPBQ9Y5S2 1711 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 CPAMD8Q8IZJ3 1885 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 CCDC88BA6NC98 1476 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 PLA2R1Q13018 1463 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 IGKV1D-17A0A075B6S4 117 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 TRBV7-7A0A0K0K1E9 115 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 A6NIN4 97 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 ODF3BA8MYP8 253 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 FAUP35544 74 aaKnown RBP3.76□□□□□ -1.81
VPS29-210ENST00000552130 POLR2JP52435 117 aaKnown RBP3.76□□□□□ -1.81
VPS29-210ENST00000552130 MIR22HGQ0VDD5 57 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 ZCCHC23Q6ZST2 131 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 SMCO4Q9NRQ5 59 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 MRPL35Q9NZE8 188 aaKnown RBP3.76□□□□□ -1.81
VPS29-210ENST00000552130 R4GN34 69 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 PARP14Q460N5 1801 aa3.76□□□□□ -1.81
VPS29-210ENST00000552130 TMSB15BA0A087X1C1 80 aa3.75□□□□□ -1.81
VPS29-210ENST00000552130 TRAV17A0A0B4J275 112 aa3.75□□□□□ -1.81
VPS29-210ENST00000552130 ATOX1O00244 68 aa3.75□□□□□ -1.81
VPS29-210ENST00000552130 KRTDAPP60985 99 aa3.75□□□□□ -1.81
VPS29-210ENST00000552130 Q5BKY6 102 aa3.75□□□□□ -1.81
VPS29-210ENST00000552130 MARF1Q9Y4F3 1742 aaKnown RBP3.75□□□□□ -1.81
VPS29-210ENST00000552130 PSME4Q14997 1843 aa3.74□□□□□ -1.81
VPS29-210ENST00000552130 SBF2Q86WG5 1849 aa3.74□□□□□ -1.81
VPS29-210ENST00000552130 IFT140Q96RY7 1462 aa3.74□□□□□ -1.81
VPS29-210ENST00000552130 MGAMO43451 1857 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms