RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TRAV9-1A0A075B6T8 112 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 IGLV1-36A0A0B4J1U3 117 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 TRAV8-2A0A0B4J237 113 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 TRAV41A0A0B4J266 112 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 IGHV1-58A0A0C4DH39 117 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 A8MWV9 139 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 ZNF736B4DX44 427 aaPredicted RBP2.32□□□□□ -2.04
CD44-217ENST00000525348 M0R378 163 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FFAR1O14842 300 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 SYNGR2O43760 224 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 APCSP02743 223 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 ASAH2BP0C7U1 165 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 ZNF823P16415 610 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 SSR2P43308 183 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 CSN1S1P47710 185 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 CACNG7P62955 275 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FAM78AQ5JUQ0 283 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FAM222AQ5U5X8 452 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 CYP2G1PQ6ZSU1 146 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 LINC00305Q7Z4B0 112 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FAM19A3Q7Z5A8 133 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 VN1R4Q7Z5H5 301 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 Q8N2B8 174 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 DRAM1Q8N682 238 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 TMEM252Q8N6L7 170 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 OR2A1Q8NGT9 310 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FAM57AQ8TBR7 257 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 TSKUQ8WUA8 353 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FXYD5Q96DB9 178 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 RBMXL1Q96E39 390 aaKnown RBP2.32□□□□□ -2.04
CD44-217ENST00000525348 PGLYRP4Q96LB8 373 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 FAM103A1Q9BTL3 118 aaKnown RBP2.32□□□□□ -2.04
CD44-217ENST00000525348 PARP12Q9H0J9 701 aaKnown RBP2.32□□□□□ -2.04
CD44-217ENST00000525348 ABRACLQ9P1F3 81 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 HIGD1BQ9P298 99 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 GREB1Q4ZG55 1949 aa2.32□□□□□ -2.04
CD44-217ENST00000525348 COL1A1P02452 1464 aaPredicted RBP2.32□□□□□ -2.04
CD44-217ENST00000525348 TANC2Q9HCD6 1990 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 TRBV6-6A0A0A6YYG2 114 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 TRAV8-4A0A0B4J246 113 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 IGKV6-21A0A0C4DH24 114 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 SSSCA1O60232 199 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 NDUFB2O95178 105 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 WISP3O95389 354 aaPredicted RBP2.31□□□□□ -2.04
CD44-217ENST00000525348 HLA-DPB1P04440 258 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 PTHLHP12272 177 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 IL9P15248 144 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 DAD1P61803 113 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 SNRPD3P62318 126 aaKnown RBP2.31□□□□□ -2.04
CD44-217ENST00000525348 RPL23P62829 140 aaKnown RBP2.31□□□□□ -2.04
CD44-217ENST00000525348 CENPWQ5EE01 88 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 KIAA2026Q5HYC2 2103 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 LGALS9CQ6DKI2 356 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 ATP5L2Q7Z4Y8 100 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 BAGE3Q86Y29 109 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 BAGE2Q86Y30 109 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 OR5AS1Q8N127 324 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 FGF13Q92913 245 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 NMNAT3Q96T66 252 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 FAM60AQ9NP50 221 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 LINC00588Q9Y4M8 146 aa2.31□□□□□ -2.04
CD44-217ENST00000525348 PTPRSQ13332 1948 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 EML5Q05BV3 1969 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 THADAQ6YHU6 1953 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 SHROOM3Q8TF72 1996 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 PCDH15Q96QU1 1955 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 NCOA6Q14686 2063 aaPredicted RBP2.3□□□□□ -2.04
CD44-217ENST00000525348 IGKV1D-8A0A087WSZ0 117 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 IGKV1D-43A0A0B4J1Z2 117 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 TRAV2A0A0B4J234 112 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 TRAV17A0A0B4J275 112 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 A8MUN3 132 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 H3BP45 60 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 ZNF73O43830 326 aaPredicted RBP2.3□□□□□ -2.04
CD44-217ENST00000525348 SLC25A14O95258 325 aaPredicted RBP2.3□□□□□ -2.04
CD44-217ENST00000525348 INSP01308 110 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 IGHV4-34P06331 123 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 INAFM2P0DMQ5 153 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 SLC25A16P16260 332 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 ZNF80P51504 273 aaPredicted RBP2.3□□□□□ -2.04
CD44-217ENST00000525348 FXYD2P54710 66 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 ZNF816Q0VGE8 651 aaPredicted RBP2.3□□□□□ -2.04
CD44-217ENST00000525348 SS18Q15532 418 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 ORMDL2Q53FV1 153 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 C12orf73Q69YU5 71 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 NOXRED1Q6NXP6 359 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 SCGB1D4Q6XE38 83 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 C5orf38Q86SI9 138 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 OR8A1Q8NGG7 326 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 MCEEQ96PE7 176 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 METTL26Q96S19 204 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 CHAC1Q9BUX1 264 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 POLEQ07864 2286 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 MUC3AQ02505 3323 aa2.3□□□□□ -2.04
CD44-217ENST00000525348 TRAV1-2A0A0B4J238 106 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 C4orf51C9J302 202 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 LST1O00453 97 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 UPK2O00526 184 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 NDUFS5O43920 106 aa2.29□□□□□ -2.04
CD44-217ENST00000525348 FSTL3O95633 263 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms