RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 MYOZ3Q8TDC0 251 aa13.63□□□□□ -0.23
CCHCR1-228ENST00000509552 FOXC2Q99958 501 aa13.63□□□□□ -0.23
CCHCR1-228ENST00000509552 IGKCP01834 107 aa13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 S100A4P26447 101 aaKnown RBP13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 KLK15Q9H2R5 256 aa13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 CBY1Q9Y3M2 126 aa13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 IGHV4-30-2A0A087WSY4 118 aa13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 SRSF1Q07955 248 aaKnown RBP eCLIP13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 AMMECR1LQ6DCA0 310 aa13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 PCP2Q8IVA1 136 aa13.62□□□□□ -0.23
CCHCR1-228ENST00000509552 K7EP13 123 aa13.61□□□□□ -0.23
CCHCR1-228ENST00000509552 BLCAPP62952 87 aa13.61□□□□□ -0.23
CCHCR1-228ENST00000509552 ASIPP42127 132 aa13.61□□□□□ -0.23
CCHCR1-228ENST00000509552 DPM2O94777 84 aa13.6□□□□□ -0.23
CCHCR1-228ENST00000509552 RHPN1-AS1Q9BWJ2 59 aa13.6□□□□□ -0.23
CCHCR1-228ENST00000509552 M0R381 172 aa13.59□□□□□ -0.23
CCHCR1-228ENST00000509552 ADAMTSL5Q6ZMM2 481 aa13.59□□□□□ -0.23
CCHCR1-228ENST00000509552 HHLA3Q9XRX5 114 aa13.59□□□□□ -0.23
CCHCR1-228ENST00000509552 AP1S3Q96PC3 154 aa13.59□□□□□ -0.23
CCHCR1-228ENST00000509552 PHLDA3Q9Y5J5 127 aa13.59□□□□□ -0.23
CCHCR1-228ENST00000509552 IGKV3-7A0A075B6H7 116 aa13.58□□□□□ -0.23
CCHCR1-228ENST00000509552 IGLV1-40P01703 118 aa13.58□□□□□ -0.23
CCHCR1-228ENST00000509552 RNASE4P34096 147 aaKnown RBP13.58□□□□□ -0.23
CCHCR1-228ENST00000509552 DAZ1Q9NQZ3 744 aaKnown RBP13.58□□□□□ -0.23
CCHCR1-228ENST00000509552 SPTAN1Q13813 2472 aaKnown RBP13.58□□□□□ -0.24
CCHCR1-228ENST00000509552 H3BRM9 83 aa13.58□□□□□ -0.24
CCHCR1-228ENST00000509552 ANXA2RQ3ZCQ2 193 aa13.58□□□□□ -0.24
CCHCR1-228ENST00000509552 DPH3P1Q9H4G8 78 aa13.58□□□□□ -0.24
CCHCR1-228ENST00000509552 TRAV8-6A0A0B4J262 113 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 TRBV7-9A0A0J9YWB2 115 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 TMEM8BA6NDV4 472 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 MED14OSP0DP75 135 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 DEFB1P60022 68 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 TM4SF20Q53R12 229 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 Q6ZS46 218 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 LCNL1Q6ZST4 164 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 FAM19A4Q96LR4 140 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 SMIM2Q9BVW6 85 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 B4DSR2 109 aa13.57□□□□□ -0.24
CCHCR1-228ENST00000509552 F6UB75 175 aa13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 RNASE8Q8TDE3 154 aaKnown RBP13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 TMEM160Q9NX00 188 aa13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 ZFHX3Q15911 3703 aa13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 ORMDL2Q53FV1 153 aa13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 ZC2HC1BQ5TFG8 222 aa13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 APRG1Q8IVJ8 170 aa13.56□□□□□ -0.24
CCHCR1-228ENST00000509552 IGKV2D-26A0A0A0MRZ7 120 aa13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 KIR3DS1Q14943 382 aa13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 GTSCR1Q86UQ5 136 aa13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 C20orf78Q9BR46 151 aa13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 MRPL35Q9NZE8 188 aaKnown RBP13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 C9orf118A6NHY6 69 aa13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 SUMO2P61956 95 aaKnown RBP13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 C14orf178Q8N769 122 aaPredicted RBP13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 HIGD1BQ9P298 99 aa13.55□□□□□ -0.24
CCHCR1-228ENST00000509552 A0A087WX48 190 aa13.54□□□□□ -0.24
CCHCR1-228ENST00000509552 K7EMT4 169 aa13.54□□□□□ -0.24
CCHCR1-228ENST00000509552 ID1P41134 155 aa13.54□□□□□ -0.24
CCHCR1-228ENST00000509552 CFHR3Q02985 330 aa13.54□□□□□ -0.24
CCHCR1-228ENST00000509552 GATA3P23771 443 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 SAMD13Q5VXD3 122 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 GAGE10A6NGK3 116 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 K7EMI3 77 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 SPRY2O43597 315 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 MGPP08493 103 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 RASL10AQ92737 203 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 VPS13CQ709C8 3753 aa13.53□□□□□ -0.24
CCHCR1-228ENST00000509552 GNRH2O43555 120 aa13.52□□□□□ -0.24
CCHCR1-228ENST00000509552 AVPP01185 164 aa13.52□□□□□ -0.24
CCHCR1-228ENST00000509552 HLA-DRB4P13762 266 aa13.52□□□□□ -0.24
CCHCR1-228ENST00000509552 PLNP26678 52 aa13.52□□□□□ -0.24
CCHCR1-228ENST00000509552 DSCR9P59020 149 aa13.52□□□□□ -0.24
CCHCR1-228ENST00000509552 HLA-DRB4X5D2U9 266 aa13.52□□□□□ -0.24
CCHCR1-228ENST00000509552 PPP1R17O96001 155 aa13.52□□□□□ -0.25
CCHCR1-228ENST00000509552 SRD5A1P18405 259 aa13.52□□□□□ -0.25
CCHCR1-228ENST00000509552 GTF2H5Q6ZYL4 71 aa13.52□□□□□ -0.25
CCHCR1-228ENST00000509552 ZNF580Q9UK33 172 aa13.52□□□□□ -0.25
CCHCR1-228ENST00000509552 PKD1L2Q7Z442 2459 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 SLC25A16P16260 332 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 TRAV12-1A0A0B4J245 112 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 H3BUT2 72 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 RNASE3P12724 160 aaKnown RBP13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 SCGB3A1Q96QR1 104 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 SPOCK3Q9BQ16 436 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 CHAC1Q9BUX1 264 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 TTTY13Q9BZ97 58 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 SELENOKQ9Y6D0 94 aa13.51□□□□□ -0.25
CCHCR1-228ENST00000509552 TOMM6Q96B49 74 aa13.5□□□□□ -0.25
CCHCR1-228ENST00000509552 RPL39LQ96EH5 51 aaKnown RBP13.5□□□□□ -0.25
CCHCR1-228ENST00000509552 CELSR1Q9NYQ6 3014 aa13.5□□□□□ -0.25
CCHCR1-228ENST00000509552 H7C1H1 209 aa13.5□□□□□ -0.25
CCHCR1-228ENST00000509552 GCSHP23434 173 aa13.5□□□□□ -0.25
CCHCR1-228ENST00000509552 FAM159AQ6UWV7 190 aa13.5□□□□□ -0.25
CCHCR1-228ENST00000509552 TRBV25-1A0A075B6N4 114 aa13.49□□□□□ -0.25
CCHCR1-228ENST00000509552 GAGE12BA1L429 117 aa13.49□□□□□ -0.25
CCHCR1-228ENST00000509552 RBX1P62877 108 aa13.49□□□□□ -0.25
CCHCR1-228ENST00000509552 TMEM95Q3KNT9 176 aa13.49□□□□□ -0.25
CCHCR1-228ENST00000509552 RAB37Q96AX2 223 aa13.49□□□□□ -0.25
CCHCR1-228ENST00000509552 CST9LQ9H4G1 147 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms