RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 SRSF9Q13242 221 aaKnown RBP eCLIP12.26□□□□□ -0.45
SCLT1-208ENST00000506368 NPBQ8NG41 125 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 CCL17Q92583 94 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 MRPL53Q96EL3 112 aaKnown RBP12.26□□□□□ -0.45
SCLT1-208ENST00000506368 SCGB3A1Q96QR1 104 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 C21orf62Q9NYP8 219 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 FAM208BQ5VWN6 2430 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 LOC107984156A0A0G2JMH3 177 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 ZNF815PA8K554 130 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 NBR2O15453 112 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 IGHG4P01861 327 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 SCGB1D4Q6XE38 83 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 ARL17AQ8IVW1 177 aa12.26□□□□□ -0.45
SCLT1-208ENST00000506368 RP1L1Q8IWN7 2480 aaPredicted RBP12.26□□□□□ -0.45
SCLT1-208ENST00000506368 LY6LH3BQJ8 138 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 PPP1R17O96001 155 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 CD7P09564 240 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 PPIFP30405 207 aaKnown RBP12.25□□□□□ -0.45
SCLT1-208ENST00000506368 HERVK_113P61574 105 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 ERCC8Q13216 396 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 CARD19Q96LW7 228 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 PRADC1Q9BSG0 188 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 COX6B1P14854 86 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 FHL3Q13643 280 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 Q6Q795 121 aa12.25□□□□□ -0.45
SCLT1-208ENST00000506368 AGRNO00468 2067 aa12.24□□□□□ -0.45
SCLT1-208ENST00000506368 NDUFA11Q86Y39 141 aa12.24□□□□□ -0.45
SCLT1-208ENST00000506368 CITED1Q99966 193 aa12.24□□□□□ -0.45
SCLT1-208ENST00000506368 IGKV3D-20A0A0C4DH25 116 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 CENPVL3A0A0U1RRI6 287 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 EFNA4P52798 201 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 CFHR4Q92496 578 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 FANCD2OSQ96PS1 177 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 FAM215AQ9Y5M1 114 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 SMAD5-AS1Q9Y6J3 95 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 IGHV7-4-1A0A0J9YVY3 117 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 F8W735 103 aaPredicted RBP12.23□□□□□ -0.45
SCLT1-208ENST00000506368 M0R381 172 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 DYNAPQ8N1N2 210 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 ZNF843Q8N446 348 aa12.23□□□□□ -0.45
SCLT1-208ENST00000506368 PRSS29PA6NIE9 313 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 RHODO00212 210 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 TRGV3P03979 118 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 SPANXN1Q5VSR9 72 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 CFAP161Q6P656 301 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 C10orf126Q8N4M7 172 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 GLMPQ8WWB7 406 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 LINC01600Q96MT4 127 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 IGHV1-69DA0A0B4J2H0 117 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 SCGB1C2P0DMR2 95 aa12.22□□□□□ -0.45
SCLT1-208ENST00000506368 SUMO2P61956 95 aaKnown RBP12.22□□□□□ -0.45
SCLT1-208ENST00000506368 PLXNB1O43157 2135 aa12.21□□□□□ -0.45
SCLT1-208ENST00000506368 ZNF462Q96JM2 2506 aa12.21□□□□□ -0.45
SCLT1-208ENST00000506368 TCL1BO95988 128 aa12.21□□□□□ -0.45
SCLT1-208ENST00000506368 HLA-DMBP28068 263 aa12.21□□□□□ -0.45
SCLT1-208ENST00000506368 BAALCQ8WXS3 180 aa12.21□□□□□ -0.45
SCLT1-208ENST00000506368 UFC1Q9Y3C8 167 aa12.21□□□□□ -0.45
SCLT1-208ENST00000506368 COL12A1Q99715 3063 aa12.21□□□□□ -0.46
SCLT1-208ENST00000506368 FAM27E3Q08E93 113 aa12.2□□□□□ -0.46
SCLT1-208ENST00000506368 LENEPQ9Y5L5 61 aa12.2□□□□□ -0.46
SCLT1-208ENST00000506368 ZFP2Q6ZN57 461 aa12.2□□□□□ -0.46
SCLT1-208ENST00000506368 RNASE6Q93091 150 aaKnown RBP12.2□□□□□ -0.46
SCLT1-208ENST00000506368 ARFGEF3Q5TH69 2177 aa12.2□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE2BQ13066 116 aa12.19□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE2EQ4V326 116 aa12.19□□□□□ -0.46
SCLT1-208ENST00000506368 ANKRD29Q8N6D5 301 aa12.19□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE2DQ9UEU5 116 aa12.19□□□□□ -0.46
SCLT1-208ENST00000506368 A0A0J9YY99 117 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 TIMM23O14925 209 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 SNCGO76070 127 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 VKORC1Q9BQB6 163 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 CLEC3BP05452 202 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 CTSGP08311 255 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 MED14OSP0DP75 135 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 PRB4P10163 310 aaPredicted RBP12.18□□□□□ -0.46
SCLT1-208ENST00000506368 RPL32P62910 135 aaKnown RBP12.18□□□□□ -0.46
SCLT1-208ENST00000506368 C2orf66Q6UXQ4 117 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 C9orf47Q6ZRZ4 202 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE12JA6NER3 117 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE7O76087 117 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE12FP0CL80 117 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE12GP0CL81 117 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE12IP0CL82 117 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 GAGE4Q13068 117 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 RASL10AQ92737 203 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 DPH3P1Q9H4G8 78 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 DYNLRB1Q9NP97 96 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 DPM3Q9P2X0 92 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 SS18L2Q9UHA2 77 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 MALRD1Q5VYJ5 2156 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 SLC25A20O43772 301 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 P0DMU3 169 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 FAM231AP0DMU4 169 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 FAM231CP0DMU5 169 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 SLC25A29Q8N8R3 303 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 PTH2Q96A98 100 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 RAX2Q96IS3 184 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 FAM110AQ9BQ89 295 aa12.17□□□□□ -0.46
SCLT1-208ENST00000506368 TRAV26-2A0A0B4J265 109 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms