RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 A0A096LPF7 62 aa17.1■□□□□ 0.33
UPF3A-209ENST00000492270 TRAV34A0A0B4J273 112 aa17.1■□□□□ 0.33
UPF3A-209ENST00000492270 FAM74A7A6NL05 159 aa17.1■□□□□ 0.33
UPF3A-209ENST00000492270 GCGP01275 180 aa17.1■□□□□ 0.33
UPF3A-209ENST00000492270 LINC00336Q6ZUF6 198 aa17.1■□□□□ 0.33
UPF3A-209ENST00000492270 SPXQ9BT56 116 aa17.1■□□□□ 0.33
UPF3A-209ENST00000492270 BCL2L11O43521 198 aa17.09■□□□□ 0.33
UPF3A-209ENST00000492270 IFNA7P01567 189 aa17.09■□□□□ 0.33
UPF3A-209ENST00000492270 SFTA3P0C7M3 94 aa17.09■□□□□ 0.33
UPF3A-209ENST00000492270 FHL2Q14192 279 aa17.09■□□□□ 0.33
UPF3A-209ENST00000492270 ESRGQ1W209 222 aa17.09■□□□□ 0.33
UPF3A-209ENST00000492270 SDF2L1Q9HCN8 221 aa17.09■□□□□ 0.33
UPF3A-209ENST00000492270 A0A0D9SG52 128 aa17.08■□□□□ 0.32
UPF3A-209ENST00000492270 RASL10AQ92737 203 aa17.08■□□□□ 0.32
UPF3A-209ENST00000492270 ZNF479Q96JC4 524 aa17.08■□□□□ 0.32
UPF3A-209ENST00000492270 ZNF471Q9BX82 626 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-209ENST00000492270 NBDYA0A0U1RRE5 68 aa17.07■□□□□ 0.32
UPF3A-209ENST00000492270 PRSS29PA6NIE9 313 aa17.07■□□□□ 0.32
UPF3A-209ENST00000492270 PEX7O00628 323 aa17.07■□□□□ 0.32
UPF3A-209ENST00000492270 KCNS1Q96KK3 526 aa17.07■□□□□ 0.32
UPF3A-209ENST00000492270 KANTRA0A1W2PQU2 76 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 PAX4O43316 350 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 CRYBA4P53673 196 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 ZFP69Q49AA0 526 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 SMUG1Q53HV7 270 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 PRO0255Q9UI72 69 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 ARL2-SNX15V9GYD0 113 aa17.06■□□□□ 0.32
UPF3A-209ENST00000492270 A0A1B0GVY2 172 aa17.05■□□□□ 0.32
UPF3A-209ENST00000492270 PFN1P07737 140 aaKnown RBP17.05■□□□□ 0.32
UPF3A-209ENST00000492270 SEC11BP0C7V7 166 aa17.05■□□□□ 0.32
UPF3A-209ENST00000492270 FBLL1A6NHQ2 334 aaKnown RBP17.04■□□□□ 0.32
UPF3A-209ENST00000492270 M0R2P5 195 aa17.04■□□□□ 0.32
UPF3A-209ENST00000492270 C1orf134Q5TEV5 83 aa17.04■□□□□ 0.32
UPF3A-209ENST00000492270 Q86TA4 180 aa17.04■□□□□ 0.32
UPF3A-209ENST00000492270 FAM213BQ8TBF2 198 aa17.04■□□□□ 0.32
UPF3A-209ENST00000492270 HHLA3Q9XRX5 114 aa17.04■□□□□ 0.32
UPF3A-209ENST00000492270 TRGV4A0A0C4DH28 118 aa17.03■□□□□ 0.32
UPF3A-209ENST00000492270 SAPCD1Q5SSQ6 148 aa17.03■□□□□ 0.32
UPF3A-209ENST00000492270 TMUB2Q71RG4 321 aa17.03■□□□□ 0.32
UPF3A-209ENST00000492270 NKX6-2Q9C056 277 aaPredicted RBP17.03■□□□□ 0.32
UPF3A-209ENST00000492270 Q9H8V8 135 aa17.03■□□□□ 0.32
UPF3A-209ENST00000492270 MRPS16Q9Y3D3 137 aaKnown RBP17.03■□□□□ 0.32
UPF3A-209ENST00000492270 ICOSQ9Y6W8 199 aa17.03■□□□□ 0.32
UPF3A-209ENST00000492270 A0A1B0GV50 99 aa17.02■□□□□ 0.32
UPF3A-209ENST00000492270 STOML3Q8TAV4 291 aa17.02■□□□□ 0.32
UPF3A-209ENST00000492270 UPK3BQ9BT76 320 aa17.02■□□□□ 0.32
UPF3A-209ENST00000492270 PKD1P98161 4303 aa17.02■□□□□ 0.31
UPF3A-209ENST00000492270 TRAV4A0A0B4J268 109 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 PFDN1O60925 122 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 PPT1P50897 306 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 SLAQ13239 276 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 SFT2D1Q8WV19 159 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 HIST1H2BAQ96A08 127 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 KRTAP1-5Q9BYS1 174 aa17.01■□□□□ 0.31
UPF3A-209ENST00000492270 UMAD1C9J7I0 102 aa17■□□□□ 0.31
UPF3A-209ENST00000492270 SOHLH1Q5JUK2 328 aa17■□□□□ 0.31
UPF3A-209ENST00000492270 CST9LP1Q5W188 147 aa17■□□□□ 0.31
UPF3A-209ENST00000492270 OR4C5Q8NGB2 326 aa17■□□□□ 0.31
UPF3A-209ENST00000492270 MBD3L1Q8WWY6 194 aa17■□□□□ 0.31
UPF3A-209ENST00000492270 C9JCJ5 164 aa16.99■□□□□ 0.31
UPF3A-209ENST00000492270 C9orf85Q96MD7 179 aa16.99■□□□□ 0.31
UPF3A-209ENST00000492270 PKHD1P08F94 4074 aa16.98■□□□□ 0.31
UPF3A-209ENST00000492270 PAGE4O60829 102 aa16.98■□□□□ 0.31
UPF3A-209ENST00000492270 ZC2HC1AQ96GY0 325 aa16.98■□□□□ 0.31
UPF3A-209ENST00000492270 IGKV3D-20A0A0C4DH25 116 aa16.97■□□□□ 0.31
UPF3A-209ENST00000492270 RNASE3P12724 160 aaKnown RBP16.97■□□□□ 0.31
UPF3A-209ENST00000492270 TPT1P13693 172 aaKnown RBP16.97■□□□□ 0.31
UPF3A-209ENST00000492270 ZNF876PQ49A33 203 aa16.97■□□□□ 0.31
UPF3A-209ENST00000492270 DPPA3Q6W0C5 159 aa16.97■□□□□ 0.31
UPF3A-209ENST00000492270 Q6ZNX1 250 aa16.97■□□□□ 0.31
UPF3A-209ENST00000492270 C6orf223Q8N319 242 aa16.97■□□□□ 0.31
UPF3A-209ENST00000492270 K7EQD1 137 aa16.96■□□□□ 0.31
UPF3A-209ENST00000492270 UBE2G1P62253 170 aa16.96■□□□□ 0.31
UPF3A-209ENST00000492270 EIF5AP63241 154 aaKnown RBP16.96■□□□□ 0.31
UPF3A-209ENST00000492270 MRPL23Q16540 153 aaKnown RBP16.96■□□□□ 0.31
UPF3A-209ENST00000492270 LGALSLQ3ZCW2 172 aaPredicted RBP16.96■□□□□ 0.31
UPF3A-209ENST00000492270 TCTE3Q8IZS6 198 aa16.96■□□□□ 0.31
UPF3A-209ENST00000492270 FMC1Q96HJ9 113 aa16.96■□□□□ 0.31
UPF3A-209ENST00000492270 PGPEP1LA6NFU8 196 aa16.95■□□□□ 0.3
UPF3A-209ENST00000492270 FABP5P3A8MUU1 101 aa16.95■□□□□ 0.3
UPF3A-209ENST00000492270 GYPEP15421 78 aa16.95■□□□□ 0.3
UPF3A-209ENST00000492270 CRIP1P50238 77 aa16.95■□□□□ 0.3
UPF3A-209ENST00000492270 LOC100131303A0A0U1RQF7 123 aa16.94■□□□□ 0.3
UPF3A-209ENST00000492270 H2AFB1P0C5Y9 115 aa16.94■□□□□ 0.3
UPF3A-209ENST00000492270 ZNF506Q5JVG8 444 aa16.94■□□□□ 0.3
UPF3A-209ENST00000492270 AKR1C3P42330 323 aa16.93■□□□□ 0.3
UPF3A-209ENST00000492270 CFAP126Q5VTH2 177 aa16.93■□□□□ 0.3
UPF3A-209ENST00000492270 LYPD5Q6UWN5 251 aa16.93■□□□□ 0.3
UPF3A-209ENST00000492270 TCEAL7Q9BRU2 100 aa16.93■□□□□ 0.3
UPF3A-209ENST00000492270 ZFP30Q9Y2G7 519 aa16.93■□□□□ 0.3
UPF3A-209ENST00000492270 RS1O15537 224 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 SH2D1AO60880 128 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 NXPH4O95158 308 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 GATA1P15976 413 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-209ENST00000492270 SRIP30626 198 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 TNP2Q05952 138 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 TTC32Q5I0X7 151 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 NEGR1Q7Z3B1 354 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 COX8CQ7Z4L0 72 aa16.92■□□□□ 0.3
UPF3A-209ENST00000492270 PCNPQ8WW12 178 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms